YRC Public Data Repository - Protein Structure Prediction

Protein:	MUG87_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	851 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MUG87_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|114662650 - gi\|114662650\|ref\|XP_510982.2\| PREDICTED: nucleoporin 93kDa [Pan troglodytes]	1003.0	[0..6]	[850..99]
gi\|18606331 - gi\|18606331\|gb\|AAH23140.1\| Nucleoporin 93 [Mus musculus]	988.0	[0..10]	[850..1]
gi\|40788963 - gi\|40788963\|dbj\|BAA07680.2\| KIAA0095 [Homo sapiens]	986.0	[0..6]	[850..10]
NUP93_RAT - Nuclear pore complex protein Nup93 OS=Rattus norvegicus GN=Nup93 PE=1 SV=1	986.0	[0..10]	[850..1]
gi\|73949816 - gi\|73949816\|ref\|XP_535293.2\| PREDICTED: similar to Nuclear pore complex protein Nup93 (Nucleoporin N...	980.0	[0..10]	[850..1]
gi\|207080222 - gi\|207080222\|ref\|NP_001128848.1\| DKFZP469K1320 protein [Pongo abelii] gi\|55730735 - gi\|55730735\|emb\|CAH92088.1\| hypothetical protein [Pongo abelii]	976.0	[0..10]	[850..1]
NUP93_XENLA - Nuclear pore complex protein Nup93 OS=Xenopus laevis GN=nup93 PE=2 SV=1	971.0	[0..10]	[850..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVASDDSPK EARGIPFLDQ KSRKLANELL EPCLPFIQFN LGEIEQRAKH YLNTVPTSKD  60
   61 GNTKAHYLLA GSGINAEQTW KKIESLSLQV RPPTTLELSF TDVDMFLKYH REKNVLNSLE 120
  121 ALVQNTQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [128-851]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IAFDQYLEEE WRSKAAKSRP SFDNILLENK KRVSFYPFSV QRSQKFASTL KMCLEEEALH  60
   61 GFQSKLVSSF CEVAREFAHD TKSLLLYESW KLLSSVILDK DSVTVFGNKG IISKAFDIET 120
  121 EDGSVNSRFY QRISDCSRKF LEAQFFEVLN KEIAKTPQAA LVGGVPSIRN KIRAYLNIRL 180
  181 LRNGVWINPD LEIIQDVPIW AFIFYLLRCG FLKEAVDFTE ENRDLFEKVA EKFPFYINAY 240
  241 AKAPNGILPR QLRSQLFSEF NQTIRLQESS DPYKYAVYKI IGRCDLSKTS CPSICSVTED 300
  301 YIWFQLILSR EFTEKSVSAH EFFSLEDVQH ILLSYGSDYF TNNGSNPVMY FFLLMLCGLY 360
  361 ERAINFLYPY FPTDAVHFAI TCAYYGLLRT APSSSVVSNE PGKIQSMLVE TKSGKPSLEF 420
  421 DRLLIDYTQT CQELSPVMSA CYLIPMCKID KYISMCHKSL CSLVLSTRDY VNLLGDIRGD 480
  481 GERTPSFLEN HRSLIGLSSV KEYLSKITLT AAKQADDQGL LSDAILLYHL AEDYDAAVTV 540
  541 INRRLGSALL RFLDQFVFPD KLISLTKSMM DVYNRNPSLY AKVDYKNRET TNLLLLTVEA 600
  601 FNAYTNKDYE QALSSLQQLE ILPLDPLDSD CETFVVRKLA KEFRFLNENL LQNVPGIVLI 660
  661 AMNSLKELYA KQKSSSFGND AISVDKLRLY RQKARRIVMY SFLIEYRMPS QILEQLNRCE 720
  721 IEMT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2qx5A
Description:	No description for 2qx5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits