YRC Public Data Repository - Protein Structure Prediction

Protein:	YJV8_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJV8_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85105466 - gi\|85105466\|ref\|XP_961968.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28923557, gi\|... - gi\|32415892\|ref\|XP_328424.1\| hypothetical protein [Neurospora crassa], gi\|28923557\|gb\|EAA32732.1\| hy...	118.0	[0..3]	[221..51]
gi\|20807038 - gi\|20807038\|ref\|NP_622209.1\| Acetyltransferase [Thermoanaerobacter tengcongensis MB4] gi\|20807038, gi\|... - gi\|20807038\|ref\|NP_622209.1\| acetyltransferase [Thermoanaerobacter tengcongensis MB4], gi\|20515525\|g...	113.0	[0..76]	[206..10]
gi\|27348256, gi\|... - gi\|27375120\|ref\|NP_766649.1\| putative acetyltransferase [Bradyrhizobium japonicum USDA 110], gi\|2734...	113.0	[0..3]	[227..44]
gi\|42554929, gi\|... - gi\|46136415\|ref\|XP_389899.1\| hypothetical protein FG09723.1 [Gibberella zeae PH-1], gi\|42554929\|gb\|E...	111.0	[0..2]	[213..33]
gi\|49650633 - gi\|49650633\|emb\|CAG80371.1\| YALI0E34243p [Yarrowia lipolytica] gi\|49650633, gi\|... - gi\|50554711\|ref\|XP_504764.1\| YALI0E34243p [Yarrowia lipolytica], gi\|49650633\|emb\|CAG80371.1\| unnamed...	110.0	[0..1]	[227..37]
gi\|167039151, gi... - gi\|167039151\|ref\|YP_001662136.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter sp.... gi\|76797381, gi\|... - gi\|76797381\|ref\|ZP_00779704.1\| Ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter ethan... gi\|241884906, gi... - gi\|241902652\|ref\|ZP_04787384.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter broc... gi\|242230040, gi... - gi\|242258437\|ref\|ZP_04803241.1\| ribosomal-protein-alanine acetyltransferase [Thermoanaerobacter sp. ...	110.0	[0..76]	[206..9]
gi\|146295284, gi... - gi\|82500547\|ref\|ZP_00885956.1\| Ribosomal-protein-alanine acetyltransferase [Caldicellulosiruptor sac...	107.0	[0..76]	[209..11]
gi\|111063001 - gi\|111063001\|gb\|EAT84121.1\| hypothetical protein SNOG_08953 [Phaeosphaeria nodorum SN15]	104.0	[0..3]	[215..56]
gi\|116618962, gi... - gi\|23023862\|ref\|ZP_00063091.1\| COG0454: Histone acetyltransferase HPA2 and related acetyltransferase...	104.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKRVEAKD YKKAAATLVD AFFDDPVCVY LCHTTNEQQF KKLMTEMFEY IVYAHIIRGL  60
   61 VLEVGDFAGI SLWMGPGNNM DDWYSILRSG LWRLKYKLDG EGRKRFFNEF LPILNDTKAD 120
  121 VLKERDDHSW YLVYVGVSSK EQGKGYLRKL IEPIFNICDQ EGLPIYLESS HLHNRPIYEH 180
  181 FGFVYQQSIY LTRDNQKVPL EIMIREPETE SKAEQSAKPK AALSKTVSAS IAEKVEGSLA 240
  241 VSSTPVC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	2qecA
Description:	No description for 2qecA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits