YRC Public Data Repository - Protein Structure Prediction

Protein:	YJV1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	77 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YJV1_SCHPO.

Description	E-value	Query Range	Subject Range
COA4 - Protein that localizes to the mitochondrial intermembrane space via the Mia40p-Erv1p system; mutants... COA4_YEAST - Cytochrome oxidase assembly factor 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COA... gi\|190405283 - gi\|190405283\|gb\|EDV08550.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	91.0	[0..11]	[60..77]
gi\|109462508, gi... - gi\|109462508\|ref\|XP_001067013.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co...	90.0	[0..11]	[63..77]
gi\|44982746, gi\|... - gi\|45187962\|ref\|NP_984185.1\| ADR089Cp [Ashbya gossypii ATCC 10895], gi\|44982746\|gb\|AAS52009.1\| ADR08... gi\|44982746 - gi\|44982746\|gb\|AAS52009.1\| ADR089Cp [Ashbya gossypii ATCC 10895]	84.0	[0..11]	[61..20]
gi\|189054277, gi... - gi\|7331256\|gb\|AAF60345.1\|AF242180_1 E2IG2 [Homo sapiens], gi\|189054277\|dbj\|BAG36797.1\| unnamed prote...	84.0	[0..11]	[63..27]
COA4_MOUSE - Cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Mus musculus GN=COA4 PE=3 SV=1	81.0	[0..11]	[63..18]
gi\|109107789 - gi\|109107789\|ref\|XP_001110707.1\| PREDICTED: similar to coiled-coil-helix-coiled-coil-helix domain co... CCDS8225.1_1 - null	78.0	[0..11]	[63..18]
gi\|50310587, gi\|... - gi\|50310587\|ref\|XP_455313.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644449\|emb\|CAG9802... gi\|49644449\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140]	77.0	[0..2]	[61..11]
gi\|38048489 - gi\|38048489\|gb\|AAR10147.1\| similar to Drosophila melanogaster CG17327 [Drosophila yakuba] FBpp0307783, FBp... - type=protein; loc=3R:complement(8823047..8823244); ID=FBpp0310820; name=CG44194-PB; parent=FBgn02650...	75.0	[0..13]	[60..5]

Back

Predicted Domain #1

Region A:
Residues: [1-77]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSIEKTPDG EEEEKDVWDT ALEKGGCVEE HLRLNDCYWD THDWRKCTEQ MEEFRKCWEK  60
   61 RHGPLPSISD KKNKNLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits