YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19075464
Organism:	Schizosaccharomyces pombe 972h-
Length:	408 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19075464.

Description	E-value	Query Range	Subject Range
IPI11_CANAL - Pre-rRNA-processing protein IPI1-1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=IPI1-1 PE=... IPI11_CANAL - Pre-rRNA-processing protein IPI1-1 OS=Candida albicans GN=IPI1-1 PE=3 SV=1	252.0	[0..1]	[278..1]
gi\|42549783, gi\|... - gi\|46128441\|ref\|XP_388774.1\| hypothetical protein FG08598.1 [Gibberella zeae PH-1], gi\|42549783\|gb\|E...	249.0	[0..1]	[284..1]
IPI1_MAGGR - Pre-rRNA-processing protein IPI1 OS=Magnaporthe grisea GN=IPI1 PE=3 SV=1 IPI1_MAGO7 - Pre-rRNA-processing protein IPI1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN...	240.0	[0..1]	[284..1]
IPI1_NEUCR - Pre-rRNA-processing protein ipi-1 OS=Neurospora crassa GN=ipi-1 PE=3 SV=1 IPI1_NEUCR - Pre-rRNA-processing protein ipi1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /...	229.0	[0..27]	[284..31]
IPI1_YEAS7 - Pre-rRNA-processing protein IPI1 OS=Saccharomyces cerevisiae (strain YJM789) GN=IPI1 PE=3 SV=1 IPI1 - Essential component of the Rix1 complex (with Rix1p and Ipi3p) that is required for processing of IT... IPI1_YEAST - Pre-rRNA-processing protein IPI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IPI1 PE...	226.0	[0..1]	[278..1]
IPI1_EMENI - Pre-rRNA-processing protein ipi1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / ... IPI1_EMENI - Pre-rRNA-processing protein ipi1 OS=Emericella nidulans GN=ipi1 PE=3 SV=1	225.0	[0..1]	[294..1]
gi\|71020435, gi\|... - gi\|71020435\|ref\|XP_760448.1\| hypothetical protein UM04301.1 [Ustilago maydis 521], ref\|XP_401916.1\| ...	215.0	[0..3]	[274..4]
gi\|1254996 - gi\|1254996\|gb\|AAB60713.1\| serine/threonine protein phosphatase type 2A regulatory subunit A	212.0	[0..18]	[267..239]
gi\|1568511, gi\|7... - pir\|\|T03684 phosphoprotein phosphatase (EC 3.1.3.16) 2A regulatory chain - common tobacco, gi\|156851...	208.0	[0..18]	[267..238]

Back

Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKSKKAKAK RADFNVKLLS EIAVLTDFLE TKTQALVLPT QAALEKEDFN TTAKDQAYFA  60
   61 HLLGMLKHHN ANQRQETLEK LTQYVLSHTS ILTTSTALLL KLTSPLILDE SSSVRDCLYR 120
  121 FLEKFIYIMG PELLEPNIGM IFLYTHSGMT HITPSIRNDS TKFLSLLINA CKDRLSSSAI 180
  181 SLQWKKTLEC FTNLLGWNSE SASVKRTTSF SKKSSANMIR HLTVCNDFLQ LGLNPKLQAK 240
  241 NQQSSVHLKY PYLQQCIVIH PKYEAFRSPC SFAYLSLF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2ie3A
Description:	No description for 2ie3A was found.

Predicted Domain #2

Region A:
Residues: [279-408]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPNKHDLVDN PTFRWQTIYP LIPGIIEFIR NSWSDACPVV KDGSNSPSAS KVCRTVLSML  60
   61 GLFTEQVFSV ADEPNNHRKK ISQVLRKINR DIELININYG TDSEWRGVLK GYDKLRERAV 120
  121 ELDALENPGK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits