YRC Public Data Repository - Protein Structure Prediction

Protein:	PT127_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	524 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PT127_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|39972461, gi\|... - gi\|39972461\|ref\|XP_367621.1\| hypothetical protein MGG_07532 [Magnaporthe grisea 70-15], gb\|EAA53255....	610.0	[0..54]	[418..379]
gi\|44982680 - gi\|44982680\|gb\|AAS51943.1\| ADR023Cp [Ashbya gossypii ATCC 10895] gi\|45187896, gi\|... - gi\|45187896\|ref\|NP_984119.1\| ADR023Cp [Ashbya gossypii ATCC 10895], gi\|44982680\|gb\|AAS51943.1\| ADR02...	597.0	[0..58]	[485..100]
gi\|40738690, gi\|... - gi\|67540740\|ref\|XP_664144.1\| hypothetical protein AN6540.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	589.0	[0..39]	[418..166]
gi\|11595670 - gi\|11595670\|emb\|CAC18291.1\| related to PET127 [Neurospora crassa]	586.0	[0..53]	[423..305]
gi\|32412634, gi\|... - gi\|32412634\|ref\|XP_326797.1\| hypothetical protein ( (AL451021) related to PET127 [Neurospora crassa]... gi\|85102792 - gi\|85102792\|ref\|XP_961390.1\| hypothetical protein NCU01304 [Neurospora crassa OR74A]	586.0	[0..53]	[423..305]
gi\|71010843, gi\|... - gi\|71010843\|ref\|XP_758422.1\| hypothetical protein UM02275.1 [Ustilago maydis 521], ref\|XP_399890.1\| ...	561.0	[0..39]	[452..280]
gi\|88183213, gi\|... - gi\|88183213\|gb\|EAQ90681.1\| hypothetical protein CHGG_02616 [Chaetomium globosum CBS 148.51], gi\|1162...	558.0	[0..45]	[423..458]
gi\|70984174, gi\|... - gi\|70984174\|ref\|XP_747606.1\| mitochondrial mRNA processing protein PET127 [Aspergillus fumigatus Af2...	549.0	[0..52]	[429..217]
gi\|119196845, gi... - gi\|90307812\|gb\|EAS37443.1\| hypothetical protein CIMG_02797 [Coccidioides immitis RS], gi\|119196845\|r...	543.0	[0..52]	[432..188]
gi\|115386240, gi... - gi\|115386240\|ref\|XP_001209661.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	542.0	[0..52]	[433..218]

Back

Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIYKKKNFG RRSVYNLKKC LHKGFQINSC NIKAADNVLH SKASAFEKVN VVDKESIGNL  60
   61 QHHLDTVLPK KKFQFLRDPK TNDYKWDEYL SKILPVDKFN FGLLSKFRPP SEDEQLQKVA 120
  121 NSIGAEFVGS TSSLTGLMSQ LHFFISKWKF PNFSDLSKGF Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [162-402]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISPNERNFTR LCRSASSVHI SYQNGLYCID KDKSLTKEPS VNIILMNVGK SLETFFTVDK  60
   61 DQFLLYKKPP SSNGVLKPLK DVFQYGRCSS LLVRSQLDCY DKKIPESGVF DLKTRAVFGV 120
  121 RMNQTQPELF KSYKLTHYYG NRISFEREYF DLIRSAFMKY SLQARLGYMQ GVFVAYHNTS 180
  181 DIFGFQYIPL VAMDRAIHGS SEIGEAEFNL NLQLLEKILQ YATSIFPKRS FRVMLSTTED 240
  241 V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [403-524]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNPPLKVYLE VADDKENRGF DLLDGQKNLE AKTVSPSNFC ALEVCALQFV NGVHKSVVKH  60
   61 LDEKETWSIK YHFRKPRDQD NLLRNYIRLR DDIKRRESKI SNPPESLLHD YYACSEQYYK 120
  121 RN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits