YRC Public Data Repository - Protein Structure Prediction

Protein:	YH5A_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	302 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YH5A_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|84627379, gi\|... - gi\|84627379\|gb\|ABC59935.1\| P-type ATPase [Petunia x hybrida], gi\|115493785\|gb\|ABI98399.1\| P-type ATP...	179.0	[0..7]	[301..317]
gi\|29374937, gi\|... - gi\|29374937\|ref\|NP_814090.1\| copper-translocating P-type ATPase [Enterococcus faecalis V583], gi\|293...	177.0	[0..2]	[299..481]
gi\|75827509 - gi\|75827509\|ref\|ZP_00756944.1\| COG2217: Cation transport ATPase [Vibrio cholerae O395]	177.0	[0..7]	[300..569]
gi\|5669167 - gi\|5669167\|gb\|AAD46188.1\| plasma membrane proton ATPase [Nicotiana plumbaginifolia]	177.0	[0..7]	[301..317]
gi\|229519232, gi... - gi\|229519232\|ref\|ZP_04408675.1\| lead cadmium zinc and mercury transporting ATPase [Vibrio cholerae R... gi\|121549496, gi... - gi\|121586230\|ref\|ZP_01676020.1\| cation transport ATPase, E1-E2 family [Vibrio cholerae 2740-80], gi\|... gi\|229369867, gi... - gi\|229607212\|ref\|YP_002877860.1\| copper-translocating P-type ATPase [Vibrio cholerae MJ-1236], gi\|22... gi\|75831281, gi\|... - gi\|75831281\|ref\|ZP_00760546.1\| COG2217: Cation transport ATPase [Vibrio cholerae MO10], gi\|254849345... gi\|126512354, gi... - gi\|153817086\|ref\|ZP_01969753.1\| cation transport ATPase, E1-E2 family [Vibrio cholerae NCTC 8457], g... gi\|227118661, gi... - gi\|227118661\|ref\|YP_002820557.1\| cation transport ATPase, E1-E2 family [Vibrio cholerae O395], gi\|22... gi\|75817002, gi\|... - gi\|75817002\|ref\|ZP_00747458.1\| COG2217: Cation transport ATPase [Vibrio cholerae V52], gi\|121726583\|... gi\|229352062, gi... - gi\|229512097\|ref\|ZP_04401576.1\| lead cadmium zinc and mercury transporting ATPase [Vibrio cholerae B... COPA_VIBCH, ATCU... - Copper-exporting P-type ATPase A OS=Vibrio cholerae GN=copA PE=3 SV=1, Copper-transporting P-type AT... COPA_VIBCH - Copper-exporting P-type ATPase A OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N1...	177.0	[0..7]	[300..578]
gi\|113578737, gi... - gi\|115463173\|ref\|NP_001055186.1\| Os05g0319800 [Oryza sativa (japonica cultivar-group)], gi\|113578737...	175.0	[0..7]	[301..352]
gi\|76151977 - gi\|76151977\|gb\|ABA39707.1\| TcrA [Enterococcus faecium]	173.0	[0..8]	[300..478]
gi\|13641333 - gi\|13641333\|gb\|AAK31799.1\| plasma membrane H+ ATPase [Lilium longiflorum]	173.0	[0..7]	[301..311]
gi\|119864307, gi... - gi\|119945703\|ref\|YP_943383.1\| heavy metal translocating P-type ATPase [Psychromonas ingrahamii 37], ...	173.0	[0..2]	[300..474]
gi\|6759597 - gi\|6759597\|emb\|CAB69823.1\| plasma membrane H+ ATPase [Prunus persica]	173.0	[0..7]	[301..314]

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Predicted Domain #1

Region A:
Residues: [1-302]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKEIDINQ KKNVLPKPED IQLIICDVDG TLLGPDHKPH PRNLRALKYL RENYPQLPFV  60
   61 LATGRQRTSV GNIREALGLH VFPCVHLNGC VVYDKGEIVA CAALKNSLAI DIIDKLKDIQ 120
  121 TCALFGYDED YVYQIKQESD KKQHGIKFLR LCGETVKDDA NEMLPQLKGP KDIFNKMVVF 180
  181 DDDTNGLEEA KKRLAGIPSD EVALTQALPQ TFEIIPPNDN KGVALKNILS KIYPSISLEN 240
  241 VLAFGDGAND VCMFELAGYS VAIRSGMPVA LKAAKAISDV SSAEGAVGEV LERIYNIPPD 300
  301 FN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.522879
Match:	1rkqA
Description:	Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.55296860681783	bayes_pls_golite062009
hydrolase activity	0.996930438913923	bayes_pls_golite062009
phosphatase activity	0.0985887286442809	bayes_pls_golite062009
phosphoric ester hydrolase activity	0.0342238658800214	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: