YRC Public Data Repository - Protein Structure Prediction

Protein:	YG06_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	485 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YG06_SCHPO.

Description	E-value	Query Range	Subject Range
NOC4L_RAT - Nucleolar complex protein 4 homolog OS=Rattus norvegicus GN=Noc4l PE=2 SV=1	429.0	[0..5]	[480..17]
NOC4L - nucleolar complex associated 4 homolog (S. cerevisiae) gi\|123983406, gi... - gi\|123998109\|gb\|ABM86656.1\| nucleolar complex associated 4 homolog (S. cerevisiae) [synthetic constr...	425.0	[0..7]	[480..19]
NOC4L_MOUSE - Nucleolar complex protein 4 homolog OS=Mus musculus GN=Noc4l PE=2 SV=1	422.0	[0..5]	[480..17]
gi\|46105488, gi\|... - gi\|46105488\|ref\|XP_380548.1\| hypothetical protein FG00372.1 [Gibberella zeae PH-1], gi\|42546789\|gb\|E...	416.0	[0..5]	[472..43]
gi\|109099286 - gi\|109099286\|ref\|XP_001105967.1\| PREDICTED: similar to nucleolar complex associated 4 homolog [Macac...	413.0	[0..7]	[480..19]
gi\|85112235 - gi\|85112235\|ref\|XP_964305.1\| hypothetical protein NCU00501 [Neurospora crassa OR74A] gi\|28926082, gi\|... - gi\|32408399\|ref\|XP_324681.1\| hypothetical protein [Neurospora crassa], gi\|28926082\|gb\|EAA35069.1\| co...	410.0	[0..2]	[471..44]
gi\|57105758 - gi\|57105758\|ref\|XP_543350.1\| PREDICTED: similar to nucleolar complex associated 4 homolog [Canis fam...	403.0	[0..5]	[480..17]

Back

Predicted Domain #1

Region A:
Residues: [1-485]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIKDLENEIY KSRKNLNNIL VLFDYIDLSN HSIDEVNDAA AALCRVYCYL SRNGLLKRPK  60
   61 EDDSSANAQV KNWVCDNYIN YTEKLTEIFS MANVEALQVS FLTMTMRLCK AESQMDENGT 120
  121 FRNQFYIRFC LELLSSSQLS DICIKDFVTS YLVPYDDVRF FFYKNSKKVI SSLIESSKTD 180
  181 DPMANLDIVA FNTIRILSAI PSPLPSSSTS SWADEPSPSS TETSSIKRAF QESWLSALSL 240
  241 PLSVNLYKQV LNVIHKRVIP FLQKPNLLMD FLTDAYNSHH AVSLLALNGL FTLMISHNLD 300
  301 YPLFYPKLYA LLDRNLLYLK TRSRFFRLLD LFLSSTHLPA TLIASFIKRL ARLALTAPPG 360
  361 AIAIVIPFIY NCLQRHPTCM QMLHRSSAES GDSFDFDQPD PLLTGAIESS LWELSTLQNH 420
  421 YYSNIASLAS IMSQKFTKPR YELEDFLDHG YATMCDAELR RPLKNEPPIE FEKRTLASGL 480
  481 EKSWI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.959
Match:	2jdqA
Description:	No description for 2jdqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits