YRC Public Data Repository - Protein Structure Prediction

Protein:	SDO1L_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDO1L_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|38099381, gi\|... - gi\|39965529\|ref\|XP_365110.1\| hypothetical protein MGG_09955 [Magnaporthe grisea 70-15], gb\|EAA46734....	161.0	[0..1]	[105..1]
gi\|46108770, gi\|... - gi\|46108770\|ref\|XP_381443.1\| hypothetical protein FG01267.1 [Gibberella zeae PH-1], gi\|42547733\|gb\|E...	159.0	[0..1]	[104..1]
gi\|85112078 - gi\|85112078\|ref\|XP_964260.1\| hypothetical protein NCU02765 [Neurospora crassa OR74A] gi\|32418950, gi\|... - gi\|32418950\|ref\|XP_329953.1\| predicted protein [Neurospora crassa], gi\|28926035\|gb\|EAA35024.1\| conse...	156.0	[0..3]	[106..2]
gi\|49096314, gi\|... - gi\|67538620\|ref\|XP_663084.1\| hypothetical protein AN5480.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	152.0	[0..9]	[105..8]
gi\|88185843, gi\|... - gi\|88185843\|gb\|EAQ93311.1\| hypothetical protein CHGG_01546 [Chaetomium globosum CBS 148.51], gi\|1161...	141.0	[0..1]	[104..1]
gi\|220699751, gi... - gi\|238487268\|ref\|XP_002374872.1\| RNA binding protein, putative [Aspergillus flavus NRRL3357], gi\|220... gi\|169770333 - gi\|169770333\|ref\|XP_001819636.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767495 - gi\|83767495\|dbj\|BAE57634.1\| unnamed protein product [Aspergillus oryzae]	137.0	[0..1]	[103..1]
gi\|115390082, gi... - gi\|115390082\|ref\|XP_001212546.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	136.0	[0..1]	[92..1]
gi\|111057350, gi... - gi\|169622039\|ref\|XP_001804429.1\| hypothetical protein SNOG_14233 [Phaeosphaeria nodorum SN15], gi\|11...	133.0	[0..1]	[104..1]
gi\|70992721, gi\|... - gi\|70992721\|ref\|XP_751209.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668488...	131.0	[0..3]	[91..2]
gi\|90298004, gi\|... - gi\|90298004\|gb\|EAS27635.1\| hypothetical protein CIMG_10240 [Coccidioides immitis RS], gi\|119173606\|r... gi\|240111871 - gi\|240111871\|gb\|EER30016.1\| hypothetical protein CPC735_013340 [Coccidioides posadasii C735 delta SO...	130.0	[0..1]	[104..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSKANQTR VCYQPEDTTF IIIASNGPDV MRWRKDKTVP LTEIVDSFQV FTTSNNKGNE  60
   61 GQLITASKQE LENTFGTSKD VDVVTKILTD GKIIPHREHG KHKEVN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1nynA
Description:	Hypothetical protein Yhr087W
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits