YRC Public Data Repository - Protein Structure Prediction

Protein:	NEM1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	476 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NEM1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|164423757, gi... - gi\|164423757\|ref\|XP_960672.2\| hypothetical protein NCU08948 [Neurospora crassa OR74A], gi\|157070223\|... gi\|28950150 - gi\|28950150\|emb\|CAD71008.1\| related to nuclear envelope protein NEM1 [Neurospora crassa]	348.0	[0..20]	[475..61]
gi\|38106583, gi\|... - gi\|39976145\|ref\|XP_369463.1\| hypothetical protein MG06001.4 [Magnaporthe grisea 70-15], gb\|EAA52873....	321.0	[0..47]	[475..86]
gi\|49086960, gi\|... - gi\|67521772\|ref\|XP_658947.1\| hypothetical protein AN1343.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	313.0	[0..44]	[475..72]
gi\|85098837 - gi\|85098837\|ref\|XP_960672.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32421793, gi\|... - gi\|32421793\|ref\|XP_331340.1\| hypothetical protein [Neurospora crassa], gi\|28922187\|gb\|EAA31436.1\| hy...	291.0	[0..20]	[431..61]
gi\|46137573, gi\|... - gi\|46137573\|ref\|XP_390478.1\| hypothetical protein FG10302.1 [Gibberella zeae PH-1], gi\|42547157\|gb\|E...	291.0	[0..46]	[463..61]
gi\|66849948, gi\|... - gi\|70995094\|ref\|XP_752313.1\| NIF domain protein [Aspergillus fumigatus Af293], gi\|66849948\|gb\|EAL902... gi\|159131069 - gi\|159131069\|gb\|EDP56182.1\| NIF domain protein [Aspergillus fumigatus A1163]	286.0	[0..24]	[475..54]
gi\|114586012 - gi\|114586012\|ref\|XP_001170973.1\| PREDICTED: small CTD phosphatase 3 isoform 1 [Pan troglodytes]	284.0	[0..198]	[472..13]
CTDSL_CHICK - CTD small phosphatase-like protein OS=Gallus gallus GN=NFI1 PE=2 SV=2 gi\|542165764\|ref... - PREDICTED: CTD small phosphatase-like protein isoform X2 [Zonotrichia albicollis] gi\|224044589 - gi\|224044589\|ref\|XP_002196491.1\| PREDICTED: CTD (carboxy-terminal domain, RNA polymerase II, polypep...	283.0	[0..197]	[472..11]
gi\|26390099 - gi\|26390099\|dbj\|BAC25842.1\| unnamed protein product [Mus musculus]	283.0	[0..197]	[474..39]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSIARLSDE INKAILATPL DDDEADKEKL ANARGRASSA TLRHYNRRRS SYSASSLSSL  60
   61 SSKPTEKEVP TRNEKPKHAN IMRVVVYWIR VFLKRIYTFF VHSARVFLYH FLNEEKEFTL 120
  121 ASFFWGLCRF VFFPVLLSYK RREMLPP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPSVRRPRFY SSYSYPSSHQ DPAYSSFKRH RSSNSYSSSS NGNHVRFQPS IAEEEISFNS  60
   61 FSNSLNSEED VCVSPMKPKE VSLMGKANSN RSGHSHQPQS TQFSPPANDN ISKLPSSFT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [267-476]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IVNDPLKSPS SSRLRIRNIT LCADKIPRPL LNSKLPRKTL VLDLDETLIH SVSRGSRTTS  60
   61 GQPIEVHVPG EHPILYYIHK RPHLDYFLSN VSQWFRLILF TASVQPYADP IIDYLERDKK 120
  121 IFAKRYYRQH CALVDSSFVK DISICNIHLS RIMIIDNSPA SYNAHKENAI PIEGWISDPS 180
  181 DVDLLNLLSF LHALQYVHDV RDLLGLRLAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	2hhlA
Description:	No description for 2hhlA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits