YRC Public Data Repository - Protein Structure Prediction

Protein:	YBE3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBE3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|73668310, gi\|... - gi\|73668310\|ref\|YP_304325.1\| 4-carboxymuconolactone decarboxylase [Methanosarcina barkeri str. Fusar...	182.0	[0..6]	[212..39]
gi\|20089302, gi\|... - gi\|20089302\|ref\|NP_615377.1\| 4-carboxymuconolactone decarboxylase [Methanosarcina acetivorans C2A], ...	179.0	[0..6]	[212..39]
gi\|45358370, gi\|... - gi\|45358370\|ref\|NP_987927.1\| carboxymuconolactone decarboxylase related protein [Methanococcus marip...	174.0	[0..6]	[212..39]
gi\|29346803, gi\|... - gi\|29346803\|ref\|NP_810306.1\| 4-carboxymuconolactone decarboxylase [Bacteroides thetaiotaomicron VPI-... gi\|253572260, gi... - gi\|253572260\|ref\|ZP_04849663.1\| 4-carboxymuconolactone decarboxylase [Bacteroides sp. 1_1_6], gi\|251...	169.0	[0..4]	[212..187]
gi\|69278498, gi\|... - gi\|69278498\|ref\|ZP_00613604.1\| Carboxymuconolactone decarboxylase [Mesorhizobium sp. BNC1], gi\|68190...	166.0	[0..1]	[213..56]
gi\|110831062, gi... - gi\|121608820\|ref\|YP_996627.1\| carboxymuconolactone decarboxylase [Verminephrobacter eiseniae EF01-2]...	162.0	[0..4]	[213..51]
gi\|150031139, gi... - gi\|150376592\|ref\|YP_001313188.1\| carboxymuconolactone decarboxylase [Sinorhizobium medicae WSM419], ...	162.0	[0..1]	[213..39]
gi\|67088090, gi\|... - gi\|67153957\|ref\|ZP_00415702.1\| Carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP], gi\|... gi\|67153957 - gi\|67153957\|ref\|ZP_00415702.1\| Carboxymuconolactone decarboxylase [Azotobacter vinelandii AvOP]	161.0	[0..4]	[211..96]
gi\|27352863, gi\|... - gi\|27379711\|ref\|NP_771240.1\| 4-carboxymuconolactone decarboxylase, putative [Bradyrhizobium japonicu...	161.0	[0..7]	[213..63]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHNTMLQRF NGLLEPTHLY IVSVVAYSAC NRPDKISGIA KEAMEHVGPS IYPKLREALV  60
   61 KSSPLVGFPR TINSLREMTT NIPPPFPDEF ARAADADIDT GKRGKIYFEK TYGKVTQRVL 120
  121 RSMQSSSLDL ANIALDYAYG KVLSFNEVVS PLETSLMIIA ALVPQDVNPQ LRGHLKGALN 180
  181 HGATKEQVMS ARNIALEISK ECGIQFKGDI ETL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.0
Match:	2q0tA
Description:	No description for 2q0tA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.22808269390207	bayes_pls_golite062009
oxidoreductase activity	0.00774709906865634	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: