YRC Public Data Repository - Protein Structure Prediction

Protein:	RTP1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	747 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RTP1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|109508075 - gi\|109508075\|ref\|XP_226428.4\| PREDICTED: hypothetical protein [Rattus norvegicus]	269.0	[0..142]	[630..247]
gi\|76639293 - gi\|76639293\|ref\|XP_616264.2\| PREDICTED: similar to GCN1 general control of amino-acid synthesis 1-li...	262.0	[0..137]	[736..1319]
gi\|26006117 - gi\|26006117\|dbj\|BAC41401.1\| mKIAA0219 protein [Mus musculus]	260.0	[0..137]	[736..314]
gi\|2282576 - gi\|2282576\|gb\|AAC51648.1\| HsGCN1 [Homo sapiens]	260.0	[0..137]	[736..400]
gi\|109098977 - gi\|109098977\|ref\|XP_001087027.1\| PREDICTED: similar to GCN1 general control of amino-acid synthesis ...	259.0	[0..137]	[736..1171]
gi\|114647253 - gi\|114647253\|ref\|XP_001159568.1\| PREDICTED: GCN1 general control of amino-acid synthesis 1-like 1 is...	259.0	[0..137]	[736..945]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDANQKLLDF AKLLNQKNDS RPVIEKLKDN ISGDLLNYFL NLLEEISKLD TDQPLSVTSL  60
   61 RCLQLFVHLT FLLGVYTQLP KEMLSQAKIK ALPIYTPKKN LVQIYNILLP LLLTPSLLQG 120
  121 PLNLHYADLL LLHLYLLNC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [140-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEQGSLIEEP RPLFLDPSWK EKVTSIMSPQ MVDPSKMISS CLSLLQPNVD NWLQDKLKHY  60
   61 LTTCLCRETG VQGFLKVYMQ AQPNSIERAR QAAHLISSVP KDISPQKYFS CILPQVWSLF 120
  121 STQPRLASQL IIAVTNTHCD IVTSFLLKKL QILEAPKVID LSPFENALDV LQVLVYIQND 180
  181 DIIRICESCV P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [331-747]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLLHLQENTT LRSKVQDILL RIISVCGTKS LLRNLTNAKH LRIFCERLTK SQLAMFLPNL  60
   61 LEIWVQQPPD KRLELLELVQ YALSNVDSDE IPSNVMLSVC TNLINEVASQ NKYSSTEISQ 120
  121 ITTNREVEEE NEEILLVLLN IISSVIGRNA ELDLENPISS LLPALEQLSN YSNREISDLA 180
  181 KDVYKTLIQS KDDYSLALSY TQSDLVPVRG QGVYMLRKLI EKKDDRINPV RVLHVLINLL 240
  241 RDENSYVHLN VISAVVSLCD KYDDSLIRLL KEYTNTNKFT VDETLLIGQA IYQTMERQGE 300
  301 LVAKFYGQIE QTCLSMLNNE NTDIKISSLN IARLLCQMTS SDAFIESAKN ILILEMGSDK 360
  361 QFLRRAAVQL LDSCKHLPDS VITTLSYVGS HDKDDFIKES CLNILANQAD AAKYYLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	2iaeA
Description:	No description for 2iaeA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits