YRC Public Data Repository - Protein Structure Prediction

Protein:	LCL3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	230 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LCL3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32419579, gi\|... - gi\|32419579\|ref\|XP_330233.1\| hypothetical protein [Neurospora crassa], gi\|28925639\|gb\|EAA34656.1\| hy... gi\|85111345 - gi\|85111345\|ref\|XP_963892.1\| hypothetical protein [Neurospora crassa OR74A]	189.0	[0..9]	[230..591]
LCL3_CANAW - Probable endonuclease LCL3 OS=Candida albicans (strain WO-1) GN=LCL3 PE=3 SV=1 orf19.5014, orf1... - orf19.5014 CGDID:CAL0001594 Assembly 19, Contig19-10216 (230830, 230123) CDS, reverse complemented, ... LCL3_CANAL - Probable endonuclease LCL3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=LCL3 PE=3 SV=1	188.0	[0..8]	[228..18]
LCL3_EMENI - Probable endonuclease lcl3 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 1... LCL3_EMENI - Probable endonuclease lcl3 OS=Emericella nidulans GN=lcl3 PE=3 SV=1	183.0	[0..9]	[230..49]
gi\|88181872, gi\|... - gi\|88181872\|gb\|EAQ89340.1\| hypothetical protein CHGG_05959 [Chaetomium globosum CBS 148.51], gi\|1161...	183.0	[0..9]	[230..246]
LCL3_MAGO7 - Probable endonuclease LCL3 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=LCL3 ...	182.0	[0..6]	[229..31]
gi\|49654348, gi\|... - gi\|50420295\|ref\|XP_458681.1\| hypothetical protein DEHA0D05731g [Debaryomyces hansenii CBS767], gi\|49...	180.0	[0..9]	[228..17]
LCL3_ASPFU - Probable endonuclease lcl3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC... LCL3_ASPFC - Probable endonuclease lcl3 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=lcl3 ...	175.0	[0..9]	[230..57]
LCL3_ASPTN - Probable endonuclease lcl3 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=lcl3 PE=3 SV=1	172.0	[0..9]	[230..58]
LCL3_YEAST - Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LCL3 PE=1 SV=... LCL3_YEAS1 - Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=LCL3 PE=3 SV=1 LCL3 - Putative protein of unknown function, has homology to Staphylococcus aureus nuclease; green fluoresc... LCL3_YEAS2 - Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain JAY291) GN=LCL3 PE=3 SV=1 LCL3_YEAS7 - Probable endonuclease LCL3 OS=Saccharomyces cerevisiae (strain YJM789) GN=LCL3 PE=3 SV=1	172.0	[0..10]	[230..18]
LCL3_ASPOR - Probable endonuclease lcl3 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=lcl3 PE=3 SV=1 LCL3_ASPFN - Probable endonuclease lcl3 OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM ... gi\|83765640 - gi\|83765640\|dbj\|BAE55783.1\| unnamed protein product [Aspergillus oryzae]	171.0	[0..9]	[230..40]

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Predicted Domain #1

Region A:
Residues: [1-230]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQESQYKEKA IIGTGLITTS IGGFFFLRRF RRISNASTIP KNYLNNSTVE NRKYKTMFGY  60
   61 VTRVGDGDNF RFYHTPGGRL LGWHWLRKVP CSRSDLSNET ISVRLAGIDA PESAHFGKQE 120
  121 QPYALEAKEF LHNKLYHKSV RIIPLKIDRY ARLVAGVQYY PIPHFFWKKD IGPQMIRKGL 180
  181 AVVYEGSDGV FCPTKKECLL ALEIVAKKKK LSLWSQGKKL ILPSVYKRGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	2f0uA
Description:	No description for 2f0uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits