YRC Public Data Repository - Protein Structure Prediction

Protein:	TVP18_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TVP18_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|39968775, gi\|... - gi\|39968775\|ref\|XP_365778.1\| hypothetical protein MG02480.4 [Magnaporthe grisea 70-15], gb\|EAA54495....	227.0	[0..13]	[154..2]
TVP18_ASHGO - Golgi apparatus membrane protein TVP18 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 992... TVP18_ASHGO - Golgi apparatus membrane protein TVP18 OS=Ashbya gossypii GN=TVP18 PE=3 SV=1	200.0	[0..14]	[163..14]
TVP18_YEAST - Golgi apparatus membrane protein TVP18 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=T... TVP18_YEAS7 - Golgi apparatus membrane protein TVP18 OS=Saccharomyces cerevisiae (strain YJM789) GN=TVP18 PE=3 SV=... TVP18 - Integral membrane protein localized to late Golgi vesicles along with the v-SNARE Tlg2p; may interac... gi\|190408302 - gi\|190408302\|gb\|EDV11567.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	197.0	[0..14]	[162..14]
TVP18_CANAL - Golgi apparatus membrane protein TVP18 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TVP18 ... gi\|238878609 - gi\|238878609\|gb\|EEQ42247.1\| conserved hypothetical protein [Candida albicans WO-1] TVP18_CANAL - Golgi apparatus membrane protein TVP18 OS=Candida albicans GN=TVP18 PE=3 SV=1	195.0	[0..14]	[153..15]
TVP18_NEUCR - Golgi apparatus membrane protein tvp-18 OS=Neurospora crassa GN=tvp-18 PE=3 SV=1 TVP18_NEUCR - Golgi apparatus membrane protein tvp-18 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 7...	191.0	[0..14]	[154..3]
TVP18_YARLI - Golgi apparatus membrane protein TVP18 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TVP18 PE=... TVP18_YARLI - Golgi apparatus membrane protein TVP18 OS=Yarrowia lipolytica GN=TVP18 PE=3 SV=1	183.0	[0..13]	[154..2]
TVP18_CANGA - Golgi apparatus membrane protein TVP18 OS=Candida glabrata GN=TVP18 PE=3 SV=1 TVP18_CANGA - Golgi apparatus membrane protein TVP18 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / ...	180.0	[0..14]	[162..14]
gi\|42553451, gi\|... - gi\|46135979\|ref\|XP_389681.1\| hypothetical protein FG09505.1 [Gibberella zeae PH-1], gi\|42553451\|gb\|E...	179.0	[0..13]	[154..2]
TVP18_DEBHA - Golgi apparatus membrane protein TVP18 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1... TVP18_DEBHA - Golgi apparatus membrane protein TVP18 OS=Debaryomyces hansenii GN=TVP18 PE=3 SV=1	178.0	[0..14]	[147..16]
TVP18_ASPFU - Golgi apparatus membrane protein tvp18 OS=Aspergillus fumigatus GN=tvp18 PE=3 SV=1 TVP18_ASPFC - Golgi apparatus membrane protein tvp18 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A11... TVP18_ASPFU - Golgi apparatus membrane protein tvp18 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 1...	174.0	[0..13]	[154..2]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFESIIVDRA KTTFLGELKS YNFSIYAQWL GILSIFLCII LGIVNLFHVT LVVLFSALTI  60
   61 IEGVLLIFIE LPFLSRICPV SDKFQAFTNA FASNYYRGLV YFIFSVVTFL SCIFMATSLI 120
  121 ATGIVLALTG LCYTFAGIKG QAFTSSSTLG GTGITTETPP STMV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits