YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19112768
Organism:	Schizosaccharomyces pombe 972h-
Length:	744 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19112768.

Description	E-value	Query Range	Subject Range
gi\|46136295, gi\|... - gi\|46136295\|ref\|XP_389839.1\| hypothetical protein FG09663.1 [Gibberella zeae PH-1], gi\|42554869\|gb\|E...	615.0	[0..1]	[742..1]
gi\|145009236, gi... - gi\|39948517\|ref\|XP_363109.1\| hypothetical protein MGG_08693 [Magnaporthe grisea 70-15], gb\|EAA51171....	603.0	[0..1]	[742..1]
gi\|85106788 - gi\|85106788\|ref\|XP_962247.1\| hypothetical protein NCU06540 [Neurospora crassa OR74A] gi\|32411829, gi\|... - gi\|32411829\|ref\|XP_326395.1\| hypothetical protein [Neurospora crassa], gi\|28923848\|gb\|EAA33011.1\| hy...	588.0	[0..1]	[742..1]
gi\|67524587, gi\|... - gi\|67524587\|ref\|XP_660355.1\| hypothetical protein AN2751.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	570.0	[0..1]	[742..1]
gi\|159126700 - gi\|159126700\|gb\|EDP51816.1\| topisomerase II associated protein (Pat1), putative [Aspergillus fumigat... gi\|66851205, gi\|... - gi\|70997661\|ref\|XP_753569.1\| topisomerase II associated protein (Pat1) [Aspergillus fumigatus Af293]...	537.0	[0..1]	[742..1]
PAT1 - Topoisomerase II-associated deadenylation-dependent mRNA-decapping factor; also required for faithfu...	520.0	[0..1]	[740..1]
gi\|119192684, gi... - gi\|90305734\|gb\|EAS35365.1\| hypothetical protein CIMG_00719 [Coccidioides immitis RS], gi\|119192684\|r...	516.0	[0..1]	[742..1]
gi\|169785979 - gi\|169785979\|ref\|XP_001827450.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83776198 - gi\|83776198\|dbj\|BAE66317.1\| unnamed protein product [Aspergillus oryzae]	506.0	[0..1]	[742..1]
gi\|115401330, gi... - gi\|115401330\|ref\|XP_001216253.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	496.0	[0..1]	[742..1]
gi\|44985575 - gi\|44985575\|gb\|AAS54271.1\| AGL220Wp [Ashbya gossypii ATCC 10895] gi\|44985575, gi\|... - gi\|45200877\|ref\|NP_986447.1\| AGL220Wp [Ashbya gossypii ATCC 10895], gi\|44985575\|gb\|AAS54271.1\| AGL22...	480.0	[0..1]	[740..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGFNTTL PKENMFPNEG QLEEDGIDFE ETYDDLGNQL NEAGDELNDE TFGVSAGSIG  60
   61 RDFDFSGTTA QASAQLEDEQ YQINQQNIFA KPVKPASSEL PQVSRLNGAS QFPSRE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [117-307]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PASTAINKLS DLQPMASIWE NIVPEKPAII PPEVASLQDR LGAQPSEKVF SLQELEEQLL  60
   61 NSMTAPKPPS QPAIPIVPSE MAAQVTRENI SSLDPAISAA SIGNVTFGQP NIPSTTTDFA 120
  121 GLAAPNMVHP SQAIPNPVMQ PSLVPQMPYP QNGMYNPSVA PPASLVNLFQ QEQLIQNQNL 180
  181 DEKRQKLERD H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.09691
Match:	1m2vB
Description:	Sec24
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [308-511]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMAQCAGLM TRSDKSFIAR IQISQLMSED PESDDFYYRV YSIIRGRKPS EEEASHFIQT  60
   61 YLGPSNNRRR GRRSENPMQK LQQQLQRLVS SAKERPKATQ LSLEGALGKI AVNTVRTPRQ 120
  121 LLNVKRPTEP ASSNSSLNNF SGFSTKKDVL HAIEKVYDLL LDFEQALRKA STLETTDQEQ 180
  181 IDTWKTTLSE KLESIWKALY INES

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [512-744]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEASSKTRPP FISIISHPKG MRLLPRLFPH LSKEQQISIL KVVVYNFDSL DIVLRGTFDV  60
   61 NGELPLDVVS EMSSFTQFII PPLLTIVNEL DLETINNLFS QLLNRTNAVY LIQTKIGLSF 120
  121 LTLFISRAEI LKQSGTVNQN EKEEWENTFN VMFNRVKGHF STVFPPPNAR AYADESYPWE 180
  181 FLAACATAAS SEQHFTLVSE TSKRAPSEIA VVRISNVNLF LNAMGLDARQ LSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits