YRC Public Data Repository - Protein Structure Prediction

Protein:	RT35_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	315 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RT35_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|190406820 - gi\|190406820\|gb\|EDV10087.1\| hypothetical protein SCRG_00856 [Saccharomyces cerevisiae RM11-1a] gi\|207345043 - gi\|207345043\|gb\|EDZ71990.1\| YGR165Wp-like protein [Saccharomyces cerevisiae AWRI1631] MRPS35 - Mitochondrial ribosomal protein of the small subunit RT35_YEAST - 37S ribosomal protein S35, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151943441 - gi\|151943441\|gb\|EDN61752.1\| mitochondrial ribosomal protein [Saccharomyces cerevisiae YJM789]	311.0	[0..53]	[303..65]
gi\|44986341 - gi\|44986341\|gb\|AAS54801.1\| AGR311Cp [Ashbya gossypii ATCC 10895] gi\|45201407, gi\|... - gi\|45201407\|ref\|NP_986977.1\| AGR311Cp [Ashbya gossypii ATCC 10895], gi\|44986341\|gb\|AAS54801.1\| AGR31...	279.0	[0..53]	[302..68]
gi\|71017833, gi\|... - gi\|71017833\|ref\|XP_759147.1\| hypothetical protein UM03000.1 [Ustilago maydis 521], ref\|XP_400615.1\| ...	232.0	[0..56]	[279..52]
gi\|49526943, gi\|... - gi\|50290403\|ref\|XP_447633.1\| hypothetical protein CAGL0I08877g [Candida glabrata CBS138], gi\|4952694... gi\|49526943 - gi\|49526943\|emb\|CAG60570.1\| unnamed protein product [Candida glabrata]	228.0	[0..53]	[301..65]
gi\|32417212, gi\|... - gi\|32417212\|ref\|XP_329084.1\| predicted protein [Neurospora crassa], gi\|28927335\|gb\|EAA36289.1\| conse... gi\|85118858 - gi\|85118858\|ref\|XP_965525.1\| hypothetical protein NCU01894 [Neurospora crassa OR74A]	228.0	[0..62]	[297..55]
gi\|39970859, gi\|... - gi\|86196615\|gb\|EAQ71253.1\| hypothetical protein MGCH7_ch7g660 [Magnaporthe grisea 70-15], gi\|3997085...	228.0	[0..63]	[239..37]
gi\|46130690, gi\|... - gi\|46130690\|ref\|XP_389125.1\| hypothetical protein FG08949.1 [Gibberella zeae PH-1], gi\|42547986\|gb\|E...	227.0	[0..65]	[301..34]
gi\|40742695, gi\|... - gi\|67901424\|ref\|XP_680968.1\| hypothetical protein AN7699.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	198.0	[0..73]	[246..46]
gi\|115433498, gi... - gi\|115433498\|ref\|XP_001216886.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	180.0	[0..74]	[258..41]
gi\|66851434, gi\|... - gi\|70998136\|ref\|XP_753798.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668514... gi\|159126466 - gi\|159126466\|gb\|EDP51582.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	177.0	[0..62]	[246..31]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNSVEFSQL GLKTAFNLSQ NKTYTSAVKK QFFSTGAFLS NGGNIDLNKH TQKNIDSKYV  60
   61 ACNSRSVTPP NDVASSVSKN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [81-315]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLRHKQRLMM AQWLMSPEVQ KAKSSSSGNV GLGPNTNQPF PLNPFFKPPR PISHSLRMKI  60
   61 TDEYLQGASI EVLARKFNTS PQRIEALIKL RRINDEFEEK KKPILHSYNE VMEKMLNACT 120
  121 KPEMMQFNDG NDIPLRSNPV SLWKSLPEGE TFTPQEAAKI LKWPSIEELN MRQNATHFHK 180
  181 TSDEHKDLNE DEELISSSPS EVGKRVFRLI DLSTGNVYRR DTGGDIYVKR KKSTT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits