YRC Public Data Repository - Protein Structure Prediction

Protein:	YNK4_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	605 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YNK4_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|1827509 - gi\|1827509\|dbj\|BAA12197.1\| unnamed protein product [Schizosaccharomyces pombe]	855.0	[0..1]	[555..1]
gi\|67516647, gi\|... - gi\|67516647\|ref\|XP_658209.1\| hypothetical protein AN0605.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	516.0	[0..38]	[532..352]
gi\|42553223, gi\|... - gi\|46124505\|ref\|XP_386806.1\| hypothetical protein FG06630.1 [Gibberella zeae PH-1], gi\|42553223\|gb\|E...	496.0	[0..39]	[445..127]
gi\|38107237, gi\|... - gi\|39972839\|ref\|XP_367810.1\| hypothetical protein MGG_07714 [Magnaporthe grisea 70-15], gb\|EAA53437....	458.0	[0..39]	[445..139]
gi\|71021059, gi\|... - gi\|71021059\|ref\|XP_760760.1\| hypothetical protein UM04613.1 [Ustilago maydis 521], ref\|XP_402228.1\| ...	453.0	[0..27]	[528..96]
gi\|28918801, gi\|... - gi\|32403416\|ref\|XP_322321.1\| hypothetical protein [Neurospora crassa], gi\|28918801\|gb\|EAA28470.1\| hy... gi\|85086591 - gi\|85086591\|ref\|XP_957706.1\| hypothetical protein [Neurospora crassa OR74A]	448.0	[0..31]	[515..1161]
gi\|169773197 - gi\|169773197\|ref\|XP_001821067.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83768928 - gi\|83768928\|dbj\|BAE59065.1\| unnamed protein product [Aspergillus oryzae]	377.0	[0..39]	[470..47]
gi\|115397317, gi... - gi\|115397317\|ref\|XP_001214250.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	374.0	[0..13]	[528..100]
gi\|70992257, gi\|... - gi\|70992257\|ref\|XP_750977.1\| actin cytoskeleton organization protein App1 [Aspergillus fumigatus Af2...	373.0	[0..13]	[539..100]
gi\|116208202, gi... - gi\|88183991\|gb\|EAQ91459.1\| hypothetical protein CHGG_03394 [Chaetomium globosum CBS 148.51], gi\|1162...	342.0	[0..69]	[445..852]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRSFGRLFR GSEESPTIND LTSITIYPQC FISTGKEYGS EPKHISVHVR GWVYENPDLN  60
   61 NLGRKDRLML NLLRRYVGLP PKSKETGTYP EKDDENTNLQ VVVDTKAQLN VNVNDGKPND 120
  121 IELSSTSKTE NDPPLSLHTT PDDLQGNGVN VPNPSLSASR SWYQSGYGIS GFFNRIMTPS 180
  181 VNSQYISTIG LAKCEEYFEE RSLASLQRGL KDEFVLVKIY ATDKNFEQKV VAEFNVATNV 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [241-444]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGYFIIDEVI PFYTTKNNKF SVEAVLLQST SEDKVIKAYM SEVPVLDRNG ISIISDIDDT  60
   61 VKNTRVIEGP RKVGETTLLA PLNTQTIEGV SDWFRVMTNL NATVHFVSNS PWQLWPTLSK 120
  121 FFTNDNMPYI SSIYLRHFNG VLQNIIEPAA ARKRSSLLTA IRSLGDRKIV LIGDNGEQDL 180
  181 QIYAEMAACF PERILGIFIR DVMS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.17
Match:	2i33A
Description:	No description for 2i33A was found.

Predicted Domain #3

Region A:
Residues: [445-605]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DFCGVLKKQT TKSNSLPEVV QTKPFATSTP DTPLKEFTTT LKDVDNEQAS EFYQLEKEPD  60
   61 TVPSTFILHR YYTYRIFVED RANKTRKPVV QVEHAASKLE NVHILCDYCK HKCSNIMEQD 120
  121 WFVQLARARG VIPLHIPIVI WFNGEEPISF TEDLLKSAFA S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits