YRC Public Data Repository - Protein Structure Prediction

Protein:	TR852_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	618 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TR852_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85106575 - gi\|85106575\|ref\|XP_962212.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28923811, gi\|... - gi\|32408177\|ref\|XP_324570.1\| hypothetical protein [Neurospora crassa], gi\|28923811\|gb\|EAA32976.1\| hy...	659.0	[0..43]	[604..167]
gi\|46116848, gi\|... - gi\|46116848\|ref\|XP_384442.1\| hypothetical protein FG04266.1 [Gibberella zeae PH-1], gi\|42550749\|gb\|E...	650.0	[0..44]	[602..106]
gi\|67900648, gi\|... - gi\|67900648\|ref\|XP_680580.1\| hypothetical protein AN7311.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	634.0	[0..45]	[587..99]
gi\|169775843 - gi\|169775843\|ref\|XP_001822388.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771123 - gi\|83771123\|dbj\|BAE61255.1\| unnamed protein product [Aspergillus oryzae]	620.0	[0..44]	[587..101]
gi\|66853642, gi\|... - gi\|71002646\|ref\|XP_756004.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668536...	604.0	[0..43]	[587..100]
gi\|115387871, gi... - gi\|115387871\|ref\|XP_001211441.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	596.0	[0..44]	[587..101]
gi\|90298622, gi\|... - gi\|90298622\|gb\|EAS28253.1\| hypothetical protein CIMG_09457 [Coccidioides immitis RS], gi\|119175108\|r...	579.0	[0..45]	[588..100]
gi\|88179719, gi\|... - gi\|88179719\|gb\|EAQ87187.1\| hypothetical protein CHGG_03806 [Chaetomium globosum CBS 148.51], gi\|1161...	579.0	[0..43]	[604..141]
gi\|149017047, gi... - gi\|157818025\|ref\|NP_001099630.1\| hypothetical protein LOC291750 [Rattus norvegicus], gi\|149017047\|gb...	564.0	[0..43]	[599..5]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNLSAKGI FQHASANASG ELFQEPVTED LEKVMQSKGL YSMEELCSII QEAYAPRVSV  60
   61 LCSRDADEFA MRKGYPKGFW ELLYPFGDR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.973	0.117	autophagy	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin

Predicted Domain #2

Region A:
Residues: [90-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IRGKVNRRGM NGEMLTLENL NLHFVPIDAL ESHLSEASFP SLRSVLCERY PGLVSPEPPS  60
   61 DYSFGVHYKN VERWAWTLAH EGNYQMPLPV YVRQLLTGIP ITPFETFSHP VAHLVVVTSH 120
  121 N

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [211-352]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSPFESLRSL INSIPYLSLP AFVFNDINYL FVYVHDEDQH DLELSMAIFD TMKQTFGDCG  60
   61 YFLRLHSQKA TLDYEHTVPF PTSSWLSAEE RLHLLSNTDT EIRLLFESDN ESLRRLSSHI 120
  121 AFNGIVSYLD KCVRAWDDQY AS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [353-541]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRRGITGKLL FASRKYLSSS NASTNSNYFP SSNAYRPFSP EAYLRKLADY SFMLRDYSHA  60
   61 NQIYEIASRQ YENDGACLYS AASLEMIVIT EHILHLKMPY MSLTNTLRIN EYMQSAMLNY 120
  121 LNKSFNSYYH AARCFLLLGQ FLSCLPAPKV DDAANWNAGL LYSKRLGPVG RAMIFQQTHT 180
  181 LFKSLSYLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [542-618]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TESTDPFSNK RTRKAALWCV LTADAWLRCR IPFRAKPFVE EAKLFYGKID WKDLKECVAA  60
   61 LDEVEVSKQP ASNIPSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits