YRC Public Data Repository - Protein Structure Prediction

Protein:	SYM1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYM1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32416286, gi\|... - gi\|32416286\|ref\|XP_328621.1\| hypothetical protein [Neurospora crassa], gi\|28924037\|gb\|EAA33195.1\| co... gi\|85107726 - gi\|85107726\|ref\|XP_962431.1\| hypothetical protein NCU07915 [Neurospora crassa OR74A]	196.0	[0..1]	[194..37]
gi\|59802852 - gi\|59802852\|gb\|AAX07641.1\| hypothetical protein [Magnaporthe grisea] gi\|39940356, gi\|... - gi\|39940356\|ref\|XP_359715.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA52370....	195.0	[0..2]	[197..38]
gi\|46116304, gi\|... - gi\|46116304\|ref\|XP_384170.1\| hypothetical protein FG03994.1 [Gibberella zeae PH-1], gi\|42550619\|gb\|E...	193.0	[0..2]	[195..38]
gi\|40746217, gi\|... - gi\|67516899\|ref\|XP_658335.1\| hypothetical protein AN0731.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	191.0	[0..3]	[204..85]
gi\|116194964, gi... - gi\|88179993\|gb\|EAQ87461.1\| hypothetical protein CHGG_04080 [Chaetomium globosum CBS 148.51], gi\|1161...	188.0	[0..1]	[199..37]
gi\|66850389, gi\|... - gi\|70995998\|ref\|XP_752754.1\| integral membrane protein, Mpv17/PMP22 family [Aspergillus fumigatus Af... gi\|159131508 - gi\|159131508\|gb\|EDP56621.1\| integral membrane protein, Mpv17/PMP22 family, putative [Aspergillus fum...	188.0	[0..2]	[204..95]
gi\|222618026, gi... - gi\|34904256\|ref\|NP_913475.1\| P0452F10.16 [Oryza sativa (japonica cultivar-group)], gi\|222618026\|gb\|E...	186.0	[0..4]	[193..3]
gi\|119173813, gi... - gi\|90298081\|gb\|EAS27712.1\| hypothetical protein CIMG_10317 [Coccidioides immitis RS], gi\|119173813\|r...	186.0	[0..4]	[196..27]
gi\|238498524, gi... - gi\|238498524\|ref\|XP_002380497.1\| integral membrane protein, Mpv17/PMP22 family, putative [Aspergillu... gi\|169781718 - gi\|169781718\|ref\|XP_001825322.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774064 - gi\|83774064\|dbj\|BAE64189.1\| unnamed protein product [Aspergillus oryzae]	186.0	[0..4]	[196..39]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSRFATRYN ALFEKAPIMT MCLTAGTLGG ISDAVAQGLT IYQTNKNAMI GLDGVRLNTH  60
   61 PEIPSIKRVL QFVTFGFAIS PFQFRWLRLL SAKFPIEKGA INVVKRVLLD QAVFAPFGTA 120
  121 FFFSWMTLAE GKGF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [135-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGAYDKLQAV FWPTLKANYM VWPFFQTVNF WLMPLQYQMP FACTVAIFWN IFLSLKNASS  60
   61 MQESGSQEIE LF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.920819
Match:	PF04117.3
Description:	No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits