YRC Public Data Repository - Protein Structure Prediction

Protein:	YLWD_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	547 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLWD_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|39977947, gi\|... - gi\|39977947\|ref\|XP_370361.1\| hypothetical protein MG06858.4 [Magnaporthe grisea 70-15], gb\|EAA55201....	430.0	[0..177]	[540..9]
gi\|109113504 - gi\|109113504\|ref\|XP_001092897.1\| PREDICTED: similar to Protein C17orf39 homolog [Macaca mulatta]	271.0	[0..348]	[546..119]
C17orf39 - chromosome 17 open reading frame 39	270.0	[0..348]	[546..119]
gi\|74268088 - gi\|74268088\|gb\|AAI02716.1\| C19H17ORF39 protein [Bos taurus]	269.0	[0..348]	[546..61]
gi\|28918575, gi\|... - gi\|40882215\|emb\|CAF06040.1\| conserved hypothetical protein [Neurospora crassa], gi\|32406292\|ref\|XP_3... gi\|85085326 - gi\|85085326\|ref\|XP_957483.1\| hypothetical protein [Neurospora crassa OR74A]	269.0	[0..183]	[546..17]
GID4_MOUSE - Glucose-induced degradation protein 4 homolog OS=Mus musculus GN=Gid4 PE=1 SV=1	265.0	[0..348]	[546..36]
gi\|42555916, gi\|... - gi\|46140245\|ref\|XP_391813.1\| hypothetical protein FG11637.1 [Gibberella zeae PH-1], gi\|42555916\|gb\|E...	264.0	[0..173]	[546..3]

Back

Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRSLDNFQN EDSSHPNEQG AWADSGSGFP NPNSNDVSNS QRNHHRHMFP LARIRSELSE  60
   61 QDSSISFTHD PLHIPLPNPS NNNDNIFHPQ VHSSFHSRSA SRQRRRSGLS RSNATRYSRR 120
  121 SLSDWLETIR ENNYDEASIP SFFSPHTERL VGRVLRLNRY LQNSELLDRN SSTFGSNPNS 180
  181 VFSAQPTE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [189-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSVEPPTSSF PIQPPLPPSR SISISNPQSL SFPSSFDQSN YNFQAASTPQ FNPLIEHLRR  60
   61 SNSPLNPSHD SAGASTFNTY FPNSTYQNIL NSLDNNPAVL DLNGPPNQES SSSASSYGSR 120
  121 TQTPNARSCS LNIVFHKHKK V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [330-547]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CTYYMIRHYA KRRLFITPTW WLRSGSVFRG LQFGGVQSIS GLPPLTNPKE RWIVDVSIHV  60
   61 VDYKRRALEG QLNAQARSSD PSSTISTAWT GEILDFSEKL NFATEKWSAP LEIDVCYWRK 120
  121 LAPFQNMDTN TFLETITNPK KLYKICQKYI FMRWKDMLIL KDQTDTSESR ITGFYFCCLC 180
  181 RENGYIQGYY YDPKHAFCSQ PLNLFPEQPS LSPSYHFV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits