YRC Public Data Repository - Protein Structure Prediction

Protein:	YLL3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YLL3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42820718 - gi\|42820718\|emb\|CAF32031.1\| smr family protein, putative [Aspergillus fumigatus] gi\|159131439 - gi\|159131439\|gb\|EDP56552.1\| Smr domain protein [Aspergillus fumigatus A1163]	179.0	[0..3]	[206..24]
gi\|40746273, gi\|... - gi\|67516743\|ref\|XP_658257.1\| hypothetical protein AN0653.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	173.0	[0..3]	[206..25]
gi\|44984323 - gi\|44984323\|gb\|AAS53289.1\| AFL083Cp [Ashbya gossypii ATCC 10895] gi\|44984323, gi\|... - gi\|45198436\|ref\|NP_985465.1\| AFL083Cp [Ashbya gossypii ATCC 10895], gi\|44984323\|gb\|AAS53289.1\| AFL08...	169.0	[0..3]	[180..24]
gi\|119181735, gi... - gi\|90300841\|gb\|EAS30472.1\| hypothetical protein CIMG_05951 [Coccidioides immitis RS], gi\|119181735\|r...	169.0	[0..3]	[206..108]
gi\|46122311, gi\|... - gi\|46122311\|ref\|XP_385709.1\| hypothetical protein FG05533.1 [Gibberella zeae PH-1], gi\|42551820\|gb\|E...	167.0	[0..2]	[206..22]
YPL199C - Putative protein of unknown function, predicted to be palmitoylated gi\|190407763 - gi\|190407763\|gb\|EDV11028.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] gi\|151942601 - gi\|151942601\|gb\|EDN60947.1\| conserved protein [Saccharomyces cerevisiae YJM789] YP199_YEAST - Smr domain-containing protein YPL199C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YP... gi\|207340698 - gi\|207340698\|gb\|EDZ68968.1\| YPL199Cp-like protein [Saccharomyces cerevisiae AWRI1631]	166.0	[0..2]	[185..24]
gi\|32403552, gi\|... - gi\|32403552\|ref\|XP_322389.1\| hypothetical protein [Neurospora crassa], gi\|28918869\|gb\|EAA28538.1\| pr... gi\|85086875 - gi\|85086875\|ref\|XP_957774.1\| hypothetical protein NCU00303 [Neurospora crassa OR74A]	163.0	[0..3]	[176..24]
gi\|115491939, gi... - gi\|115491939\|ref\|XP_001210597.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	162.0	[0..3]	[206..72]
gi\|46436368, gi\|... - gi\|68482529\|ref\|XP_714774.1\| hypothetical protein CaO19.9786 [Candida albicans SC5314], gi\|68482408\|... orf19.2246, orf1... - orf19.2246 CGDID:CAL0006270 Assembly 19, Contig19-10143 (31083, 30313) CDS, reverse complemented, tr...	158.0	[0..3]	[174..27]
gi\|162317816, gi... - gi\|162318428\|gb\|AAI57130.1\| NEDD4 binding protein 2 [synthetic construct], gi\|162317816\|gb\|AAI56352.... gi\|67906816 - gi\|67906816\|ref\|NP_001020088.1\| Nedd4 binding protein 2 [Mus musculus]	151.0	[0..3]	[150..1526]

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Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYEKFRAL ASKEAEKRGY LFQEAQHAYS AGNKAKAHEL SQEGKLCGER MENYNRQAAS  60
   61 AIYLYKNS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.346787
Match:	PF08590.1
Description:	No description for PF08590.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.891	0.001	biological_process	a.2.2	Ribosomal protein L29 (L29p)

Predicted Domain #2

Region A:
Residues: [69-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QCNPDEIDLH GLYIDEAVQA VQQRIENCIR RGDNHLHIIV GRGNHSANHV EKLRPAIVRM  60
   61 LEQQSIKYNS EVNEGRIYVY LPSATSPIQP NFNCIQEPQE AYSRPQHSTL TDQVEPEKIV 120
  121 EEIATNCFPR LKTCCAIM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	2d9iA
Description:	No description for 2d9iA was found.

Predicted functions:

Term	Confidence	Notes
binding	1.46180911639784	bayes_pls_golite062009
catalytic activity	0.368034275052766	bayes_pls_golite062009
protein binding	0.224535421875415	bayes_pls_golite062009
ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity	0.122352120181415	bayes_pls_golite062009
polynucleotide kinase activity	0.122352120181415	bayes_pls_golite062009
polydeoxyribonucleotide kinase activity	0.122352120181415	bayes_pls_golite062009
ATP-dependent polynucleotide kinase activity	0.122352120181415	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: