YRC Public Data Repository - Protein Structure Prediction

Protein:	ILM1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ILM1_SCHPO.

Description	E-value	Query Range	Subject Range
orf19.10575, orf... - orf19.3057 CGDID:CAL0001437 Assembly 19, Contig19-10163 (247290, 246787) CDS, reverse complemented, ... gi\|46443193, gi\|... - gi\|68469542\|ref\|XP_721284.1\| hypothetical protein CaO19.10575 [Candida albicans SC5314], gi\|68468993...	174.0	[0..7]	[149..6]
gi\|44981086 - gi\|44981086\|gb\|AAS50938.1\| ABR166Cp [Ashbya gossypii ATCC 10895] gi\|45185397, gi\|... - gi\|45185397\|ref\|NP_983114.1\| ABR166Cp [Ashbya gossypii ATCC 10895], gi\|44981086\|gb\|AAS50938.1\| ABR16...	166.0	[0..8]	[138..1]
ILM1_YEAST - Protein ILM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ILM1 PE=1 SV=1 ILM1 - Protein of unknown function; may be involved in mitochondrial DNA maintenance; required for slowed D... gi\|190409590 - gi\|190409590\|gb\|EDV12855.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]	161.0	[0..16]	[142..10]
gi\|49526131, gi\|... - gi\|50288785\|ref\|XP_446822.1\| unnamed protein product [Candida glabrata], gi\|49526131\|emb\|CAG59753.1\|... gi\|49526131 - gi\|49526131\|emb\|CAG59753.1\| unnamed protein product [Candida glabrata]	119.0	[0..15]	[144..19]
gi\|50413441, gi\|... - gi\|50413441\|ref\|XP_457263.1\| hypothetical protein DEHA0B06996g [Debaryomyces hansenii CBS767], gi\|49...	118.0	[0..7]	[149..6]
gi\|49642676, gi\|... - gi\|50307127\|ref\|XP_453542.1\| unnamed protein product [Kluyveromyces lactis], gi\|49642676\|emb\|CAH0063... gi\|49642676 - gi\|49642676\|emb\|CAH00638.1\| KLLA0D10780p [Kluyveromyces lactis]	112.0	[0..8]	[141..1]
gi\|50553991, gi\|... - gi\|50553991\|ref\|XP_504404.1\| YALI0E25916p [Yarrowia lipolytica], gi\|49650273\|emb\|CAG80004.1\| unnamed... gi\|49650273 - gi\|49650273\|emb\|CAG80004.1\| YALI0E25916p [Yarrowia lipolytica]	81.0	[0..12]	[157..4]
gi\|111067703, gi... - gi\|169601502\|ref\|XP_001794173.1\| hypothetical protein SNOG_03618 [Phaeosphaeria nodorum SN15], gi\|11...	67.0	[0..6]	[156..11]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFSFRAIVL FYCCMLTFAG IGFLWNPKFV VESGLVALIG ASMEVKPLIV TQDNLSTLAL  60
   61 SGLVFLILGM IYTISLLQSN FLFFSGITPI RAIFDFILTG FIYLKKEHIA SNSLTFTFAF 120
  121 CDLMWQFWMF AAMSEERAKY LKNQKKAEEL AARKAREVEE S

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits