YRC Public Data Repository - Protein Structure Prediction

Protein:	SLM1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	498 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLM1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|189091782 - gi\|189091782\|ref\|XP_001929724.1\| [Podospora anserina] gi\|27803001, gi\|... - gi\|27803001\|emb\|CAD60704.1\| unnamed protein product [Podospora anserina], gi\|188219244\|emb\|CAP49224....	413.0	[0..5]	[483..157]
gi\|42551081, gi\|... - gi\|46123991\|ref\|XP_386549.1\| hypothetical protein FG06373.1 [Gibberella zeae PH-1], gi\|42551081\|gb\|E...	383.0	[0..5]	[492..145]
gi\|39942956, gi\|... - gi\|39942956\|ref\|XP_361015.1\| hypothetical protein MG03558.4 [Magnaporthe grisea 70-15], gb\|EAA51963....	364.0	[0..5]	[474..208]
gi\|44982377 - gi\|44982377\|gb\|AAS51686.1\| ADL234Cp [Ashbya gossypii ATCC 10895] gi\|44982377, gi\|... - gi\|45187639\|ref\|NP_983862.1\| ADL234Cp [Ashbya gossypii ATCC 10895], gi\|44982377\|gb\|AAS51686.1\| ADL23...	352.0	[0..29]	[479..241]
gi\|66848740, gi\|... - gi\|70992517\|ref\|XP_751107.1\| PH domain protein [Aspergillus fumigatus Af293], gi\|66848740\|gb\|EAL8906...	350.0	[0..5]	[467..136]
gi\|40743574, gi\|... - gi\|67539002\|ref\|XP_663275.1\| hypothetical protein AN5671.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	348.0	[0..5]	[462..131]
gi\|111059328 - gi\|111059328\|gb\|EAT80448.1\| hypothetical protein SNOG_12036 [Phaeosphaeria nodorum SN15]	347.0	[0..5]	[474..127]
gi\|114194862, gi... - gi\|115389922\|ref\|XP_001212466.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	346.0	[0..5]	[476..128]
gi\|85093000 - gi\|85093000\|ref\|XP_959607.1\| hypothetical protein NCU02425 [Neurospora crassa OR74A] gi\|28921051, gi\|... - gi\|32421515\|ref\|XP_331201.1\| hypothetical protein [Neurospora crassa], gi\|28921051\|gb\|EAA30371.1\| co...	338.0	[0..5]	[490..158]
gi\|88184754, gi\|... - gi\|88184754\|gb\|EAQ92222.1\| hypothetical protein CHGG_00457 [Chaetomium globosum CBS 148.51], gi\|1161...	337.0	[0..5]	[474..141]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELSGKSEFP TRTEIPNQAS NGDAVPNTDA YMGLCNSLTY RFEGWRHLVE NLIAFFKQLE  60
   61 STSKNNAKEY MKLSKVIVHP YKDANVFEEH GIQDIFAALR DQTAAIASDS EQISIQLPGT 120
  121 IINILELLRE D

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	2v0oA
Description:	No description for 2v0oA was found.

Predicted Domain #2

Region A:
Residues: [132-407]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LREHCKKIAA EGTKGVKVVE KQRAETQKYL SLLDRALLPW RASSPPTVNI KNDPFIVDRQ  60
   61 VLNCLARQVQ EENNHSVAVA QLQEFSFRFE QNLIAKIKDT VKQFEGMMNQ THVKAINHLQ 120
  121 EVVRVSEAQT LAGEWTGYAK REPEFIHGSV PPRSVDAIKY PGKNDQPTVP IMAGYLIRKT 180
  181 SFLKKKQRGF YAFTHSGYLY EFKSSDSLQD PEPEFALYIP DCLIGRPSEK KPKFKITGKD 240
  241 ATKKIFGARN DYAFRASNNT ELMRWWEALN THIANV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.30103
Match:	2dx1A
Description:	No description for 2dx1A was found.

Predicted Domain #3

Region A:
Residues: [408-498]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NYIQPLSNAN GPSAVSDSDD DDDDPNDFRP AVERQSSTMN TRMSQPSSAV NTNRSYGSEQ  60
   61 IPSYADSQGN SGANNNFIYN ASATGHNAWN V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	2j59M
Description:	No description for 2j59M was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits