YRC Public Data Repository - Protein Structure Prediction

Protein:	NBP35_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NBP35_SCHPO.

Description	E-value	Query Range	Subject Range
NBP35_CRYNB - Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans var. neoformans serotype D (... NBP35_CRYNJ - Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans var. neoformans serotype D (... NBP35_CRYNE - Cytosolic Fe-S cluster assembly factor NBP35 OS=Cryptococcus neoformans GN=NBP35 PE=3 SV=1	253.0	[0..3]	[313..23]
gi\|33585709 - gi\|33585709\|gb\|AAH55436.1\| Nubp1 protein [Mus musculus]	253.0	[0..9]	[317..2]
NUBP1_RAT - Cytosolic Fe-S cluster assembly factor NUBP1 OS=Rattus norvegicus GN=Nubp1 PE=1 SV=1	252.0	[0..11]	[317..4]
gi\|40555721 - gi\|40555721\|gb\|AAH64668.1\| Nubp1 protein [Danio rerio]	252.0	[0..7]	[316..2]
NUP1A_XENLA - Cytosolic Fe-S cluster assembly factor nubp1-A OS=Xenopus laevis GN=nubp1-A PE=2 SV=1	251.0	[0..7]	[317..4]
NBP35_ASPFU - Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus fumigatus GN=nbp35 PE=3 SV=1 NBP35_ASPFU - Cytosolic Fe-S cluster assembly factor nbp35 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /... gi\|159129988 - gi\|159129988\|gb\|EDP55102.1\| nucleotide binding protein Nbp35, putative [Aspergillus fumigatus A1163]	250.0	[0..5]	[315..22]

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Predicted Domain #1

Region A:
Residues: [1-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQIQETVPLD APEHCPGPSS ENAGTASACE GCPNQQICAS APRGEDPDLP LVVERLKEIK  60
   61 HKILVLSGKG GVGKSTFSSQ LAWGLSLEED KQIGLMDVDI CGPSIPRIMG VEKEEAHQSS 120
  121 KGWSPIYVCP NLAVMSIGFL LPSEDSSVIW RGPKKNGLIK QFIKDVNWEN LDYLIVDTPP 180
  181 GTSDEHLSLV QFFKNSGIDG AVVVTTPQEV ALQDVRKEID FCRKASIPIL GLVENMSGFV 240
  241 CPSCKGKSNI FTITTGGGEA LAKEMGLPFL GKIPLDPLIA RSCDFGKSFI DECPESPASE 300
  301 IIIDIINKID ESLQKRQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	2ph1A
Description:	No description for 2ph1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits