YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|19115510
Organism:	Schizosaccharomyces pombe 972h-
Length:	335 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19115510.

Description	E-value	Query Range	Subject Range
pnu1 - endodeoxyribonuclease Pnu1 PNU1_SCHPO - Nuclease 1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnu1 PE=2 SV=2	357.0	[0..1]	[320..1]
NUC1 - Major mitochondrial nuclease, has RNAse and DNA endo- and exonucleolytic activities; has roles in mi... NUC1_YEAST - Mitochondrial nuclease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NUC1 PE=1 SV=1	351.0	[0..1]	[326..1]
gi\|39939832, gi\|... - gi\|39939832\|ref\|XP_359453.1\| hypothetical protein MG05324.4 [Magnaporthe grisea 70-15], gb\|EAA52632....	330.0	[0..3]	[322..2]
gi\|46124617, gi\|... - gi\|46124617\|ref\|XP_386862.1\| hypothetical protein FG06686.1 [Gibberella zeae PH-1], gi\|42554779\|gb\|E...	316.0	[0..32]	[319..78]
gi\|28918100, gi\|... - gi\|32403006\|ref\|XP_322116.1\| hypothetical protein [Neurospora crassa], gi\|28918100\|gb\|EAA27781.1\| mi... gi\|85082932 - gi\|85082932\|ref\|XP_957017.1\| mitochondrial nuclease [Neurospora crassa OR74A]	315.0	[0..31]	[320..48]
gi\|46438489, gi\|... - gi\|68478368\|ref\|XP_716805.1\| hypothetical protein CaO19.967 [Candida albicans SC5314], gi\|68478247\|r... orf19.967, orf19... - orf19.967 CGDID:CAL0003747 Assembly 19, Contig19-10080 (110678, 111640) CDS, translated using codon ...	312.0	[0..10]	[316..4]
gi\|67523459, gi\|... - gi\|67523459\|ref\|XP_659789.1\| hypothetical protein AN2185.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	310.0	[0..43]	[315..60]
gi\|119192888, gi... - gi\|90305836\|gb\|EAS35467.1\| hypothetical protein CIMG_00821 [Coccidioides immitis RS], gi\|119192888\|r...	310.0	[0..34]	[326..47]
gi\|14485242 - gi\|14485242\|gb\|AAK62983.1\|AF384668_1 DNA/RNA non-specific nuclease [Coccidioides immitis]	310.0	[0..34]	[326..47]
gi\|116192047, gi... - gi\|88181654\|gb\|EAQ89122.1\| hypothetical protein CHGG_05741 [Chaetomium globosum CBS 148.51], gi\|1161...	308.0	[0..59]	[319..36]

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Predicted Domain #1

Region A:
Residues: [1-335]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNLIKSFG LIAIGAISGV TFTHFYYKGY QGSDVPDLTP RYTKFDSAGR ALESIYDFNA  60
   61 TKFFQYGIPG PVADQRVNHG YMSVFDRRTR NPFYTAETIT QESLNQRKGN RRYSEFVPDD 120
  121 NIPEMFQAKL GDYRGSGYDR GHQVPAADCK FSQEAMNETF YLSNMCPQVG DGFNRNYWAY 180
  181 FEDWCRRLTS KYGSVTIMTG PLYLPKKNER GQWEVQYRVI GNPPNVAVPT HFFKVIIAEK 240
  241 SGEPTSSPSV AAFVLPNKPI ADNFPLKNFA VPVEVVERAS GLEILSNVPK GNRKQLCSEV 300
  301 VCQLNVKEFV ESVKQKQKNQ VFLVFPVIVL YYENI

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Detection Method:	PSI-BLAST
Confidence:	55.221849
Match:	1zm8A
Description:	Apo Crystal structure of Nuclease A from Anabaena sp.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits