YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|71008864, gi\|... - gi\|71008864\|ref\|XP_758245.1\| hypothetical protein UM02098.1 [Ustilago maydis 521], ref\|XP_399713.1\| ...	383.0	[0..33]	[516..209]
gi\|47216987 - gi\|47216987\|emb\|CAG04929.1\| unnamed protein product [Tetraodon nigroviridis]	361.0	[0..75]	[516..48]
PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus GN=psd PE=3 SV=1 PSD_VIBVY - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain YJ016) GN=psd PE=3 SV=1 PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain CMCP6) GN=psd PE=3 SV=1	287.0	[0..268]	[513..35]
gi\|46109966, gi\|... - gi\|46109966\|ref\|XP_382041.1\| hypothetical protein FG01865.1 [Gibberella zeae PH-1], gi\|42544557\|gb\|E...	286.0	[0..12]	[516..68]
PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus GN=psd PE=3 SV=1 PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22...	286.0	[0..268]	[513..35]
gi\|33573902 - gi\|33573902\|emb\|CAE38217.1\| phosphatidylserine decarboxylase proenzyme [Bordetella parapertussis] gi\|33597474 - gi\|33597474\|ref\|NP_885117.1\| phosphatidylserine decarboxylase [Bordetella parapertussis 12822]	284.0	[0..221]	[516..18]
gi\|90413342, gi\|... - gi\|90413342\|ref\|ZP_01221335.1\| phosphatidylserine decarboxylase [Photobacterium profundum 3TCK], gi\|...	284.0	[0..238]	[514..6]
PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum GN=psd PE=3 SV=1 PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum (strain SS9) GN=psd PE=3 SV=1	283.0	[0..238]	[514..6]
PSD_VIBCM - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain M66-2) GN=psd PE=3... gi\|121591588, gi... - gi\|121591588\|ref\|ZP_01678841.1\| phosphatidylserine decarboxylase [Vibrio cholerae 2740-80], gi\|12154... gi\|229506866, gi... - gi\|229506866\|ref\|ZP_04396374.1\| phosphatidylserine decarboxylase [Vibrio cholerae BX 330286], gi\|229... PSD_VIBCH - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae GN=psd PE=3 SV=1 gi\|153823996, gi... - gi\|229508671\|ref\|ZP_04398165.1\| phosphatidylserine decarboxylase [Vibrio cholerae B33], gi\|229354306... gi\|229516053, gi... - gi\|229516053\|ref\|ZP_04405504.1\| phosphatidylserine decarboxylase [Vibrio cholerae RC9], gi\|229346956... gi\|229606380, gi... - gi\|229606380\|ref\|YP_002877028.1\| phosphatidylserine decarboxylase [Vibrio cholerae MJ-1236], gi\|2293... PSD_VIBCH - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El To... PSD_VIBC3 - Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Class... gi\|254847354, gi... - gi\|75829152\|ref\|ZP_00758466.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae MO10], gi\|... gi\|75814208 - gi\|75814208\|ref\|ZP_00744831.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae V52]	283.0	[0..268]	[514..35]
gi\|254227002, gi... - gi\|75817710\|ref\|ZP_00748020.1\| COG0688: Phosphatidylserine decarboxylase [Vibrio cholerae V51], gi\|2...	283.0	[0..268]	[514..9]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPRQRFRRF HPRWSKVNLR GFGGVGALKG VKALNGMNVR VSMRLKWISN RIHRIRRSRR  60
   61 LGRLSISVRP NGSWQVYLLS SLPLRSLSRV WGQFNRAHLP TFLRTPGFKL YAWVFGCNLS 120
  121 ELK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [124-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPDLTHYRNF QDFFCRELRP ETRPVDPVSP VVSPVDGRIV CQGVVDNNRI QHVKGLSYSL  60
   61 EALLGGISSS NPLVVNFEDE ITPDLIQKHE QFAEQHSISL NSNNRYRKAD ASAAVVDEHS 120
  121 DEEALLCAFT DHPHFYLNDS RNSLNYFCPF SAFEDISNSV RSSCGKRLSP SSNFDLNN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [302-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGGDDDLRSE SSSDFESAPA SILEHEPTNW DDWVQEADVT DIDSLPWHNI RPGNKLFYSV  60
   61 IYLAPGDYHR FHSPADWVIE SRRHFSGELF SVSPFLARRL HNLFVLNERV ALLGRYEHGF 120
  121 MSMIPVGATN VGSIVINCDP TLSTNRLVLR KKSLGTFQEA VYKNASPVLD GMPVSRGEQV 180
  181 GGFQLGSTVV LVFEAPADFE FSTYQGQYVR VGEAL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.785265835914434	bayes_pls_golite062009
catalytic activity	0.303926649807816	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: