YRC Public Data Repository - Protein Structure Prediction

Protein:	YFT2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	443 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFT2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|40739812, gi\|... - gi\|67902554\|ref\|XP_681533.1\| hypothetical protein AN8264.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	427.0	[0..12]	[393..13]
gi\|46435333, gi\|... - gi\|68484576\|ref\|XP_713819.1\| hypothetical protein CaO19.686 [Candida albicans SC5314], gi\|46435333\|g... orf19.686 - orf19.686 CGDID:CAL0001137 Assembly 19, Contig19-10064 (70465, 68870) CDS, reverse complemented, tra...	418.0	[0..15]	[393..8]
gi\|115432966, gi... - gi\|115432966\|ref\|XP_001216620.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	336.0	[0..14]	[393..14]
gi\|169776595 - gi\|169776595\|ref\|XP_001822764.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771499 - gi\|83771499\|dbj\|BAE61631.1\| unnamed protein product [Aspergillus oryzae]	290.0	[0..10]	[393..12]
gi\|90304065, gi\|... - gi\|90304065\|gb\|EAS33696.1\| hypothetical protein CIMG_04720 [Coccidioides immitis RS], gi\|119189345\|r...	254.0	[0..8]	[437..7]
gi\|49068316, gi\|... - gi\|71004626\|ref\|XP_756979.1\| hypothetical protein UM00832.1 [Ustilago maydis 521], ref\|XP_398447.1\| ...	251.0	[0..26]	[248..45]
gi\|45185076, gi\|... - gi\|45185076\|ref\|NP_982793.1\| ABL154Wp [Ashbya gossypii ATCC 10895], gi\|44980712\|gb\|AAS50617.1\| ABL15... gi\|44980712 - gi\|44980712\|gb\|AAS50617.1\| ABL154Wp [Ashbya gossypii ATCC 10895]	234.0	[0..13]	[406..29]
YNL193W - Putative protein of unknown function; exhibits a two-hybrid interaction with Yhr151cp in a large-sca...	229.0	[0..14]	[196..15]
gi\|66845557, gi\|... - gi\|70984846\|ref\|XP_747929.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668455...	221.0	[0..54]	[393..1]

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Predicted Domain #1

Region A:
Residues: [1-443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFSRNQVLK GLKTKKAKPK KNPTVDELFE IAIDLEESGD RWRLEPAKCL RFYQKSLETY  60
   61 DRYLLQCPND FDARFNKARL LLNMATNCDM LYKDSQVCLQ KSIEMHKHAL LLQEAPDIWF 120
  121 NLAQVHLNLA EIWVDLDRED LAYPEIQQAL QSISHSIDLQ ERERIEWENT IQTSSQQKYE 180
  181 EIPDIQARRL YFIEADKEAS TLVTEIASLA CSCKLLEESD FEKLCQIMLP ITEKLDILKL 240
  241 MDWYLAKTKR LVLGGKENEV AWIDLLQVFD HQLSQLPQLN LQNPLDPNSS VKPLHIQLLC 300
  301 DKADAYIDFA ETLLDSCVST EESASIEIMT RAWNMLGVAA KSLKMANTYN PNHVRILISR 360
  361 ADLEIQRAAI PIMVAQNSKL VLYKNAKVLY EKAFRDYSTK KTTRTFAEIV LKHYQLQKLT 420
  421 NPETIKMLDS LTEVAQEDIL NTI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.11
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.26999948840808	bayes_pls_golite062009
protein binding	0.305336743191506	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: