YRC Public Data Repository - Protein Structure Prediction

Protein:	YF22_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YF22_SCHPO.

Description	E-value	Query Range	Subject Range
CERS4_MOUSE - Ceramide synthase 4 OS=Mus musculus GN=Cers4 PE=1 SV=1	218.0	[0..13]	[289..78]
gi\|109494930, gi... - gi\|157819977\|ref\|NP_001100587.1\| LAG1 homolog, ceramide synthase 4 [Rattus norvegicus], gi\|149015624...	218.0	[0..13]	[289..78]
gi\|62896801 - gi\|62896801\|dbj\|BAD96341.1\| LAG1 longevity assurance homolog 4 variant [Homo sapiens]	198.0	[0..13]	[289..78]
gi\|109016494 - gi\|109016494\|ref\|XP_001106777.1\| PREDICTED: similar to LAG1 longevity assurance homolog 2 isoform 1 ...	196.0	[0..54]	[282..387]
CERS4_BOVIN - Ceramide synthase 4 OS=Bos taurus GN=CERS4 PE=2 SV=1	193.0	[0..15]	[289..80]
gi\|73987186 - gi\|73987186\|ref\|XP_542126.2\| PREDICTED: similar to LAG1 longevity assurance homolog 4 [Canis familia...	191.0	[0..13]	[289..118]
gi\|31418772, gi\|... - gi\|41054507\|ref\|NP_955922.1\| LAG1 longevity assurance homolog 5 [Danio rerio], gi\|31418772\|gb\|AAH531...	190.0	[0..51]	[282..109]
gi\|19526448, gi\|... - gi\|47938696\|gb\|AAH72190.1\| TRH4 protein [Xenopus laevis], gi\|19526448\|gb\|AAL89720.1\|AF483906_1 TRH4 ...	188.0	[0..51]	[280..109]

Back

Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSAVTPSDQ GLLPRGPIAL EEFVKPFCDR FGLTKLPRHM HVILLSALFY QIINILSPVI  60
   61 SRHLSTHYAK LSKKTRLNWD AHVVSSVQSI VLICLGYTCL KEVNAFPDKL FGYSVVAGDI 120
  121 YALTAGYFVW DLYITVRYVH ITGIGFVIHA IAALFVITFS YRPYLMYYGP TYLSWELSTP 180
  181 FLNIHYFLDK TNRTGSKFQM INGFILIVTF ICVRIAWGWF SAYSTAIEIL NHINVAPWAL 240
  241 SLFYLAANMS LNCLNLFWVS KMIDAIRRRA HGEKKSTPLQ VTSEYAKKNI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits