YRC Public Data Repository - Protein Structure Prediction

Protein:	YF75_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	659 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YF75_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	257.0	[0..64]	[659..1841]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	246.0	[0..64]	[659..839]
MYH1_HORSE - Myosin-1 OS=Equus caballus GN=MYH1 PE=2 SV=1	246.0	[0..64]	[659..840]
MYH2 - myosin, heavy chain 2, skeletal muscle, adult	244.0	[0..64]	[659..843]
MYH2_BOVIN - Myosin-2 OS=Bos taurus GN=MYH2 PE=2 SV=1	244.0	[0..64]	[659..842]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1	243.0	[0..64]	[659..841]
gi\|109113271 - gi\|109113271\|ref\|XP_001113877.1\| PREDICTED: myosin, heavy polypeptide 2, skeletal muscle, adult [Mac...	243.0	[0..64]	[659..841]

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Predicted Domain #1

Region A:
Residues: [1-75]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSIIIRQYR FLARYLEPEF VKDPALRNAN ARPREKLQRL SHIQFSELLT DVADELQRRI  60
   61 NNDPKVRFLP PVDSY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [76-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPKRNHARQK LSSLAPTRLR DLCMDVFFEV QSRYSGALKE VSSNTPPNMT RAASQPPPQV  60
   61 QRLPASAPKH DLYSSANASS ASLHPTEQRT TSSPTIPSYA NRTHTDSPTS LSHRLPNVPD 120
  121 TNALNTVQAN NSSTSSLSQG AQTGIDSSSN YLSRIEMLES SLAKSNSLLD SSKSEMEALK 180
  181 AKSISDATKH KNEIFQLEEK LHEASHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	2i1jA
Description:	No description for 2i1jA was found.

Predicted Domain #3

Region A:
Residues: [283-576]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEISIKKLND AENRIKELEN NPTLSFNPEL EKNLKLMQEL IVAESSKTQH IVELESCIDS  60
   61 LKAETERWKK VAINAKSAKI DEDIRLFTMT TVPMKSIREL ISPNGFLDEQ LYIRYFVEMN 120
  121 VFVASLRRDS PSQWMSTAKD IALTLEAIVS SLREKSLLEE LPDLGKKVDD LCSFTNSLME 180
  181 QVRLAVINGA LLPIYHVDAS ACSISISLMD IAKTYGLTNT GKSSLSVGRN SLHPVDDLKA 240
  241 LSVAKTLLSE KSKQFSETNQ KLLDAISSDS SSSTIQQRVH EDINVIRDTL FDVS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [577-659]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLELMRDRA AYAVIHNALQ EMRRYCMQLI EQEGHGENFG FTDNNSVPPL TDLAFSAAKC  60
   61 FKDILRAIED AEFSVQRTQF STR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.39794
Match:	1c1gA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits