YRC Public Data Repository - Protein Structure Prediction

Protein:	AVL9_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	469 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AVL9_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|85106334 - gi\|85106334\|ref\|XP_962162.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28923760, gi\|... - gi\|32413659\|ref\|XP_327309.1\| hypothetical protein [Neurospora crassa], gi\|28923760\|gb\|EAA32926.1\| hy...	628.0	[0..3]	[461..10]
gi\|46136199, gi\|... - gi\|46136199\|ref\|XP_389791.1\| hypothetical protein FG09615.1 [Gibberella zeae PH-1], gi\|42553664\|gb\|E...	612.0	[0..2]	[461..40]
gi\|49086178, gi\|... - gi\|67517634\|ref\|XP_658622.1\| hypothetical protein AN1018.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	572.0	[0..13]	[461..12]
gi\|83770617 - gi\|83770617\|dbj\|BAE60750.1\| unnamed protein product [Aspergillus oryzae] gi\|169763378 - gi\|169763378\|ref\|XP_001727589.1\| hypothetical protein [Aspergillus oryzae RIB40]	563.0	[0..13]	[461..12]
gi\|115491897, gi... - gi\|115491897\|ref\|XP_001210576.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	557.0	[0..13]	[461..12]
gi\|44985687 - gi\|44985687\|gb\|AAS54311.1\| AGL180Wp [Ashbya gossypii ATCC 10895] gi\|45200917, gi\|... - gi\|45200917\|ref\|NP_986487.1\| AGL180Wp [Ashbya gossypii ATCC 10895], gi\|44985687\|gb\|AAS54311.1\| AGL18...	545.0	[0..7]	[467..9]
gi\|190406147 - gi\|190406147\|gb\|EDV09414.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] AVL9_YEAST - Late secretory pathway protein AVL9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVL9... AVL9 - Conserved protein involved in exocytic transport from the Golgi; mutation is synthetically lethal wi... gi\|151941279 - gi\|151941279\|gb\|EDN59657.1\| conserved protein [Saccharomyces cerevisiae YJM789]	540.0	[0..1]	[448..1]
gi\|38110460, gi\|... - gi\|39952361\|ref\|XP_363897.1\| hypothetical protein MG01823.4 [Magnaporthe grisea 70-15], gb\|EAA56172....	537.0	[0..13]	[457..37]
gi\|46099498, gi\|... - gi\|71019443\|ref\|XP_759952.1\| hypothetical protein UM03805.1 [Ustilago maydis 521], ref\|XP_401420.1\| ...	531.0	[0..3]	[461..133]
gi\|88179726, gi\|... - gi\|88179726\|gb\|EAQ87194.1\| hypothetical protein CHGG_03813 [Chaetomium globosum CBS 148.51], gi\|1161...	528.0	[0..5]	[461..14]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDENGASFQV LCLATIGFHH LRGPEIEHLF PESMDFPKEW SILPFLSLPD GAHSSEKDFV  60
   61 YFTLPFPNDE GTVFGLSCTR QLNASSLKNI PSDVTRSSVQ KAVVVITTSP PFGHIKDNLD 120
  121 IVTNAYFSQG DFSNLDVLRD FFHVLTRKEQ DVHIALNINL KSFLCEWRQN ALVLLKVLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [180-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGKRILVYDK SAERLGNFQY SLLSLIPCMM SHLQDVSSPS AHSLEKSLHK PASLQTSDKR  60
   61 SLLAYTGFPL IIFGEGSMFS PYTPLQLVHV LEAKSSTSWL AGTTNTLIML NQNKMAEVIV 120
  121 RSDTHQIEFV DPTIKNLTS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [319-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTYTDKSWME DIISRVESSL EMELPGFEGS DDWIRNQFEL YIFGMLATVK YYNFLKKQDD  60
   61 SILSQYHYLP STSCISDYGE TFLLEWMKTN TFRIWNNIAD DDLFDVILPK HPCKEEHKVP 120
  121 ISARIATLFS AVKITPKSRD GEDEGSKEPA V

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits