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View Structure Prediction Details

Protein: gi|109129959
Organism: Macaca mulatta
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109129959.

Description E-value Query
Range
Subject
Range
GPM6B_MOUSE - Neuronal membrane glycoprotein M6-b OS=Mus musculus GN=Gpm6b PE=1 SV=2
0.0 [1..328] [1..328]
gi|55729342 - gi|55729342|emb|CAH91404.1| hypothetical protein [Pongo abelii]
gi|55729342|emb|... - hypothetical protein [Pongo pygmaeus]
0.0 [1..328] [1..328]
gi|76666247 - gi|76666247|ref|XP_869276.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform...
0.0 [5..328] [1..324]
ENSPTRT00000050546 - null
ENSCJAT00000007761 - null
gi|109129963 - gi|109129963|ref|XP_001098845.1| PREDICTED: glycoprotein M6B isoform 3 [Macaca mulatta]
gi|119619253, gi... - gi|50263050|ref|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens], gi|28703833|gb|AAH47295.1...
gi|190690045, gi... - gi|190691419|gb|ACE87484.1| glycoprotein M6B protein [synthetic construct], gi|190690045|gb|ACE86797...
0.0 [1..299] [1..299]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPAMETAAE ENTEQSQERK VNSRAEMEIG RYHWMYPGSK NHQYHPVPTL GDRASPLSSP  60
   61 GCFECCIKCL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [71-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGVPYASLVA TILCFSGVAL FCGCGHVALA GTVAILEQHF STNASDHALL SEVIQLMQYV  60
   61 I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [132-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGIASFFFLY GIILLAEGFY TTSAVKELHG EFKTTACGRC ISGMFVFLTY VLGVAWLGVF  60
   61 GFSAVPVFMF YNIWSTCEVI KSPQTNGTTG VEQICVDIRQ YGIIPWNAFP GKICGSALEN 120
  121 ICNTNEFYMS YHLFIVACAG AGATVIALIH FLMILSSNWA YLKDASKMQA YQDIKAKEEQ 180
  181 ELQDIQSRSK EQLNSYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle