YRC Public Data Repository - Protein Structure Prediction

Protein:	SH3L3_MOUSE
Organism:	Mus musculus
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SH3L3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|33866840, gi\|... - gi\|33866840\|ref\|NP_898399.1\| glutaredoxin [Synechococcus sp. WH 8102], gi\|33639441\|emb\|CAE08825.1\| G...	116.0	[0..1]	[90..1]
gi\|48833861, gi\|... - gi\|69256136\|ref\|ZP_00605751.1\| Glutaredoxin [Magnetococcus sp. MC-1], gi\|68247688\|gb\|EAN29772.1\| Glu...	115.0	[0..1]	[92..1]
gi\|56751788, gi\|... - gi\|56751788\|ref\|YP_172489.1\| glutaredoxin [Synechococcus elongatus PCC 6301], gi\|56686747\|dbj\|BAD799... gi\|81301132, gi\|... - gi\|81301132\|ref\|YP_401340.1\| glutaredoxin GrxC [Synechococcus elongatus PCC 7942], gi\|81170013\|gb\|AB...	115.0	[0..1]	[93..1]
gi\|238794392, gi... - gi\|77977371\|ref\|ZP_00832821.1\| COG0695: Glutaredoxin and related proteins [Yersinia intermedia ATCC ...	115.0	[0..1]	[90..1]
gi\|56676735, gi\|... - gi\|56694998\|ref\|YP_165344.1\| glutaredoxin [Ruegeria pomeroyi DSS-3], gi\|56676735\|gb\|AAV93401.1\| glut...	115.0	[0..1]	[90..1]
gi\|229904474, gi... - gi\|229904474\|ref\|ZP_04519585.1\| glutaredoxin [Yersinia pestis Nepal516], gi\|229678592\|gb\|EEO74697.1\|... gi\|165936101, gi... - gi\|89103916\|ref\|ZP_01176476.1\| COG0695: Glutaredoxin and related proteins [Yersinia pestis biovar Or... gi\|108781380, gi... - gi\|108809467\|ref\|YP_653383.1\| glutaredoxin 3 [Yersinia pestis Antiqua], gi\|108781380\|gb\|ABG15438.1\| ... gi\|229706627, gi... - gi\|229836179\|ref\|ZP_04456347.1\| glutaredoxin [Yersinia pestis Pestoides A], gi\|229706627\|gb\|EEO92633... gi\|229839915, gi... - gi\|229839915\|ref\|ZP_04460074.1\| glutaredoxin [Yersinia pestis biovar Orientalis str. PEXU2], gi\|2296... gi\|229690307, gi... - gi\|229841997\|ref\|ZP_04462152.1\| glutaredoxin [Yersinia pestis biovar Orientalis str. India 195], gi\|... gi\|21956737, gi\|... - gi\|22123996\|ref\|NP_667419.1\| glutaredoxin 3 [Yersinia pestis KIM], gi\|21956737\|gb\|AAM83670.1\|AE01360... gi\|25282789 - pir\|\|AB0009 glutaredoxin [imported] - Yersinia pestis (strain CO92) gi\|51587702, gi\|... - gi\|51594420\|ref\|YP_068611.1\| glutaredoxin 3 [Yersinia pseudotuberculosis IP 32953], gi\|51587702\|emb\|... gi\|45439930, gi\|... - gi\|45439930\|ref\|NP_991469.1\| glutaredoxin 3 [Yersinia pestis biovar Microtus str. 91001], gi\|4543478... gi\|15978179, gi\|... - gi\|218927285\|ref\|YP_002345160.1\| glutaredoxin 3 [Yersinia pestis CO92], gi\|16120417\|ref\|NP_403730.1\|... gi\|149290280, gi... - gi\|150260872\|ref\|ZP_01917600.1\| glutaredoxin [Yersinia pestis CA88-4125], gi\|149290280\|gb\|EDM40357.1... gi\|145601079, gi... - gi\|145601079\|ref\|YP_001165155.1\| glutaredoxin 3 [Yersinia pestis Pestoides F], gi\|145212775\|gb\|ABP42... gi\|167418716, gi... - gi\|167418716\|ref\|ZP_02310469.1\| glutaredoxin 3 [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|167399402, gi... - gi\|167399402\|ref\|ZP_02304926.1\| glutaredoxin 3 [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1... gi\|167471019 - gi\|167471019\|ref\|ZP_02335723.1\| glutaredoxin 3 [Yersinia pestis FV-1] gi\|167426654, gi... - gi\|167426654\|ref\|ZP_02318407.1\| glutaredoxin 3 [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|186893408, gi... - gi\|186893408\|ref\|YP_001870520.1\| glutaredoxin 3 [Yersinia pseudotuberculosis PB1/+], gi\|186696434\|gb... gi\|170026346, gi... - gi\|170026346\|ref\|YP_001722851.1\| glutaredoxin 3 [Yersinia pseudotuberculosis YPIII], gi\|169752880\|gb... gi\|162418373, gi... - gi\|77634055\|ref\|ZP_00796164.1\| COG0695: Glutaredoxin and related proteins [Yersinia pestis Angola], ... Q66GC0\|Q66GC0_YERPS - Glutaredoxin - Yersinia pseudotuberculosis gi\|165926165, gi... - gi\|165926165\|ref\|ZP_02221997.1\| glutaredoxin 3 [Yersinia pestis biovar Orientalis str. F1991016], gi... gi\|153947711, gi... - gi\|77630857\|ref\|ZP_00793443.1\| COG0695: Glutaredoxin and related proteins [Yersinia pseudotuberculos... gi\|166213646, gi... - gi\|166213646\|ref\|ZP_02239681.1\| glutaredoxin 3 [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|166011460, gi... - gi\|166011460\|ref\|ZP_02232358.1\| glutaredoxin 3 [Yersinia pestis biovar Antiqua str. E1979001], gi\|16...	114.0	[0..1]	[90..1]
gi\|77958476, gi\|... - gi\|77958476\|ref\|ZP_00822509.1\| COG0695: Glutaredoxin and related proteins [Yersinia bercovieri ATCC ...	114.0	[0..1]	[90..1]
gi\|22294596, gi\|... - gi\|22298417\|ref\|NP_681664.1\| hypothetical protein tll0874 [Thermosynechococcus elongatus BP-1], gi\|2...	114.0	[0..3]	[93..31]
gi\|78213949, gi\|... - gi\|78213949\|ref\|YP_382728.1\| glutaredoxin GrxC [Synechococcus sp. CC9605], gi\|78198408\|gb\|ABB36173.1...	114.0	[0..1]	[91..1]
gi\|88775094, gi\|... - gi\|88793580\|ref\|ZP_01109294.1\| glutaredoxin 3 GrxC [Alteromonas macleodii 'Deep ecotype'], gi\|887750...	113.0	[0..1]	[93..1]

Back

Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLRVYSTS VTGSREIKSQ QSEVTRILDG KRIQYQLVDI SQDNALRDEM RTLAGNPKAT  60
   61 PPQIVNGNHY CGDYELFVEA VEQDTLQEFL KLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1sj6A
Description:	NMR Structure and Regulated Expression in APL Cell of Human SH3BGRL3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits