YRC Public Data Repository - Protein Structure Prediction

Protein:	TIP39_MOUSE
Organism:	Mus musculus
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIP39_MOUSE.

Description	E-value	Query Range	Subject Range
PTH2 - parathyroid hormone 2 TIP39_BOVIN - Tuberoinfundibular peptide of 39 residues OS=Bos taurus GN=PTH2 PE=1 SV=1	140.0	[0..1]	[100..1]
gi\|109461908, gi... - gi\|62639714\|ref\|XP_574444.1\| PREDICTED: similar to tuberoinfundibular peptide of 39 residues preproh...	136.0	[0..1]	[100..1]
gi\|73947986 - gi\|73947986\|ref\|XP_854766.1\| PREDICTED: similar to tuberoinfundibular 39 residue protein precursor [...	132.0	[0..1]	[99..42]
gi\|76642113 - gi\|76642113\|ref\|XP_875079.1\| PREDICTED: similar to tuberoinfundibular 39 residue protein precursor [...	131.0	[0..1]	[100..157]
gi\|109125499 - gi\|109125499\|ref\|XP_001114966.1\| PREDICTED: similar to tuberoinfundibular 39 residue protein precurs...	124.0	[0..1]	[99..1]
gi\|15911835 - gi\|15911835\|gb\|AAL06596.1\| tuberoinfundibular 39 residue protein precursor [Mus musculus]	120.0	[0..1]	[90..1]
gi\|34592154 - gi\|34592154\|gb\|AAQ76286.1\| tuberoinfundibular peptide Tip39 splice variant [Danio rerio]	89.0	[0..51]	[99..87]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METCQMSRSP RERLLLLLLL LLLVPWGTGP ASGVALPLAG VFSLRAPGRA WAGLGSPLSR  60
   61 RSLALADDAA FRERARLLAA LERRRWLDSY MQKLLLLDAP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.657	a.4.1	Homeodomain-like
View	Download	0.595	a.64.2	Bacteriocin AS-48
View	Download	0.427	a.101.1	Uteroglobin-like
View	Download	0.374	b.36.1	PDZ domain-like
View	Download	0.358	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits