YRC Public Data Repository - Protein Structure Prediction

Protein:	RL10A_MOUSE
Organism:	Mus musculus
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL10A_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|114607013 - gi\|114607013\|ref\|XP_518425.2\| PREDICTED: similar to ribosomal protein L10a [Pan troglodytes]	260.0	[0..4]	[217..144]
gi\|109070853 - gi\|109070853\|ref\|XP_001111950.1\| PREDICTED: similar to ribosomal protein L10a [Macaca mulatta]	260.0	[0..4]	[217..138]
RL10A_MACFA - 60S ribosomal protein L10a OS=Macaca fascicularis GN=RPL10A PE=2 SV=3	249.0	[0..1]	[217..1]
gi\|74150338 - gi\|74150338\|dbj\|BAE32219.1\| unnamed protein product [Mus musculus]	247.0	[0..1]	[217..1]
gi\|73972658 - gi\|73972658\|ref\|XP_851596.1\| PREDICTED: similar to ribosomal protein L10a isoform 3 [Canis familiari...	247.0	[0..1]	[217..1]
gi\|61365818, gi\|... - gi\|61371360\|gb\|AAX43654.1\| ribosomal protein L10a [synthetic construct], gi\|61365818\|gb\|AAX42768.1\| ...	246.0	[0..1]	[217..1]
gi\|531171 - gi\|531171\|gb\|AAA86463.1\| Csa-19	246.0	[0..1]	[217..1]
gi\|73972666, gi\|... - gi\|73972666\|ref\|XP_532118.2\| PREDICTED: similar to ribosomal protein L10a isoform 1 [Canis familiari... ENSMMUG000000159... - null, null tr\|G1SKZ8\|G1SKZ8... - Ribosomal protein OS=Oryctolagus cuniculus GN=RPL10A PE=3 SV=2 RL10A_BOVIN - 60S ribosomal protein L10a OS=Bos taurus GN=RPL10A PE=2 SV=3 gi\|61355871, gi\|... - gi\|61355881\|gb\|AAX41186.1\| ribosomal protein L10a [synthetic construct], gi\|61355871\|gb\|AAX41185.1\| ... ENSCJAT00000030456 - null RPL10A - ribosomal protein L10a RL10A_RAT - 60S ribosomal protein L10a OS=Rattus norvegicus GN=Rpl10a PE=1 SV=2 tr\|M3WHU6\|M3WHU6... - Ribosomal protein OS=Felis catus GN=RPL10A PE=3 SV=1 gi\|148667795, gi... - gi\|74185403\|dbj\|BAE30175.1\| unnamed protein product [Mus musculus], gi\|74178048\|dbj\|BAE29816.1\| unna...	246.0	[0..1]	[217..1]
gi\|54609211, gi\|... - gi\|54609211\|gb\|AAV34821.1\| ribosomal protein L10A [Bombyx mori], gi\|112983523\|ref\|NP_001037147.1\| ri...	244.0	[0..1]	[217..1]

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Predicted Domain #1

Region A:
Residues: [1-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKVSRDTL YEAVREVLHG NQRKRRKFLE TVELQISLKN YDPQKDKRFS GTVRLKSTPR  60
   61 PKFSVCVLGD QQHCDERKAV DIPHMDIEAL KKLNKNKKLV KKLAKKYDAF LASESLIKQI 120
  121 PRILGPGLNK AGKFPSLLTH NENMVAKVDE VKSTIKFQMK KVLCLAVAVG HVKMTDDELV 180
  181 YNIHLAVNFL VSLLKKNWQN VRALYIKSTM GKPQRLY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.69897
Match:	1s1iA
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits