YRC Public Data Repository - Protein Structure Prediction

Protein:	USE1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	222 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for USE1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|109123828 - gi\|109123828\|ref\|XP_001113229.1\| PREDICTED: uncharacterized hematopoietic stem/progenitor cells prot...	201.0	[0..5]	[215..13]
gi\|73986054 - gi\|73986054\|ref\|XP_865756.1\| PREDICTED: similar to USE1-like protein (Hematopoietic stem/progenitor ...	199.0	[0..5]	[215..26]
gi\|117646422, gi... - gi\|167773831\|gb\|ABZ92350.1\| uncharacterized hematopoietic stem/progenitor cells protein MDS032 [synt... gi\|55648577 - gi\|55648577\|ref\|XP_512478.1\| PREDICTED: uncharacterized hematopoietic stem/progenitor cells protein ... USE1 - unconventional SNARE in the ER 1 homolog (S. cerevisiae)	198.0	[0..5]	[215..13]
gi\|109503146, gi... - ref\|XP_214304.2\| similar to RIKEN cDNA 2010315L10 [Rattus norvegicus], gi\|109503901\|ref\|XP_001065114...	194.0	[0..5]	[215..24]
USE1_MOUSE - Vesicle transport protein USE1 OS=Mus musculus GN=Use1 PE=1 SV=1	193.0	[0..5]	[215..24]
gi\|115497660, gi... - gi\|76620934\|ref\|XP_886012.1\| PREDICTED: similar to USE1-like protein (Hematopoietic stem/progenitor ...	192.0	[0..5]	[215..13]

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Predicted Domain #1

Region A:
Residues: [1-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKDLISRLE RQFKLKRDEF QDPLELLKFE KNLDYARKLL WEEGKCQLDK VAEPQGLSKR  60
   61 IMDLQGRIYD LNVTMEKKLK IEEKKIKSKQ EKEIAHALQS IQERELRERQ QMSNVEASNA 120
  121 QLLTNQRSMQ TEISESLLHL ASVLKENALS FTNALVTDNQ VVERTGSLLD KNAHSLRHAN 180
  181 HGVQSYSKSK RLSFWLQLGM IIAVVVSFIV MIFILQFTKN QN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.51
Match:	1jchA
Description:	Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits