YRC Public Data Repository - Protein Structure Prediction

Protein:	HUA1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HUA1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	182.0	[0..7]	[199..1484]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	156.0	[0..1]	[140..1401]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	149.0	[0..3]	[195..1513]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	144.0	[0..6]	[194..1058]
gi\|7494579 - gi\|7494579\|pir\|\|T29959 DNA-directed RNA polymerase II large subunit ama-1 - Caenorhabditis elegans	139.0	[0..15]	[157..1691]
gi\|68473217, gi\|... - gi\|68473217\|ref\|XP_719414.1\| hypothetical protein CaO19.7655 [Candida albicans SC5314], gi\|46441230\|... orf19.7655 - RPO21 CGDID:CAL0000919 Assembly 19, Contig19-2518 (190144, 195330) CDS, translated using codon table...	139.0	[0..4]	[177..1515]
gi\|73955449 - gi\|73955449\|ref\|XP_858007.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	136.0	[0..42]	[167..1707]
gi\|83767526, gi\|... - gi\|9955855\|dbj\|BAB12227.1\| RNA polymerase II largest subunit [Aspergillus oryzae], gi\|83767526\|dbj\|B... gi\|169770395 - gi\|169770395\|ref\|XP_001819667.1\| hypothetical protein [Aspergillus oryzae RIB40]	132.0	[0..9]	[199..1545]
gi\|76635636 - gi\|76635636\|ref\|XP_881215.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	129.0	[0..55]	[167..1694]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDDSVPPPS YEEVLRQEGV IDSPNSSNGQ TSTSAGHPSS SSSTLPNYAA SSLNSRPVSS  60
   61 SGSGNAYSQA PYPPARPTSQ RPNSWQPGNA STMYASPPPS SNYNTAKPPY QTSQFYARPQ 120
  121 SSYAPPPSGR PRISY

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.992
Match:	2j63A
Description:	No description for 2j63A was found.

Predicted Domain #2

Region A:
Residues: [136-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PYPPGYMCYK CHNTGYKDSG RPCGRCARRF GRSYDVQFSR PPPGALVVYP GDPRIPGRVC  60
   61 GNCKGSGQLD FIFFTEICPV CNGVGKIPY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits