YRC Public Data Repository - Protein Structure Prediction

Protein:	YE42_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YE42_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|220943808 - gi\|220943808\|gb\|ACL84447.1\| Cchl-PA [synthetic construct] FBpp0307185, Cchl-PA - The gene Cytochrome c heme lyase is referred to in FlyBase by the symbol Dmel\Cchl (CG6022, FBgn0038...	314.0	[0..3]	[213..51]
gi\|54638717, gi\|... - gi\|54638717\|gb\|EAL28119.1\| GA19303-PA [Drosophila pseudoobscura], gi\|125775537\|ref\|XP_001358976.1\| G...	305.0	[0..3]	[216..52]
gi\|148235817, gi... - gi\|27924209\|gb\|AAH45005.1\| Hccs-prov protein [Xenopus laevis], gi\|148235817\|ref\|NP_001080580.1\| holo...	297.0	[0..13]	[208..101]
gi\|74007107 - gi\|74007107\|ref\|XP_537950.2\| PREDICTED: similar to Cytochrome c-type heme lyase (CCHL) (Holocytochro... gi\|29437340 - gi\|29437340\|gb\|AAH49998.1\| Similar to holocytochrome c synthase (cytochrome c heme-lyase) [Mus muscu...	295.0	[0..13]	[208..69]
gi\|94469118 - gi\|94469118\|gb\|ABF18408.1\| holocytochrome c synthetase [Aedes aegypti]	294.0	[0..12]	[213..67]
gi\|54020928, gi\|... - gi\|89267376\|emb\|CAJ82341.1\| holocytochrome c synthase (cytochrome c heme-lyase) [Xenopus tropicalis]...	294.0	[0..13]	[208..64]
CCHL_MOUSE - Cytochrome c-type heme lyase OS=Mus musculus GN=Hccs PE=1 SV=2	292.0	[0..13]	[208..69]
gi\|62751775, gi\|... - gi\|62751775\|ref\|NP_005324.2\| holocytochrome c synthase (cytochrome c heme-lyase) [Homo sapiens], gi\|...	292.0	[0..13]	[208..65]
gi\|58380235, gi\|... - gi\|58380235\|ref\|XP_310401.2\| AGAP003843-PA [Anopheles gambiae str. PEST], gi\|55243971\|gb\|EAA06088.2\|... AGAP003843-PA - cytochrome c heme-lyase\|protein_coding\|2R:44296234:44297070:-1\|gene:AGAP003843	292.0	[0..2]	[213..55]

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Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPEQLNQEE ESKCPVPPEV RDAWLKSHGG KKPSEVHDTP HPTMLPTERE ISTIPKVVTE  60
   61 SDSGKEEKWI YPSQQMFFDA MKRKNWNPHP EDMKTIVPIH NAVNERAWQD ILQWEQGWGS 120
  121 EKCGGPKLER FDGNVKKLTP KARILNLLGY NKPFDRHDWL VNRCGRKVAY VIDFYNGPTV 180
  181 NGTPSIYLDV RPKLSVHGAW MRVYRWTNEH FSQNSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	65.124939
Match:	PF01265.8
Description:	No description for PF01265.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits