YRC Public Data Repository - Protein Structure Prediction

Protein:	MDM28_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	485 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM28_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|7490747, gi\|1... - pir\|\|T42226 hypothetical protein - fission yeast (Schizosaccharomyces pombe) (fragment), gi\|1749442...	560.0	[0..5]	[485..1]
gi\|46134037, gi\|... - gi\|46134037\|ref\|XP_389334.1\| hypothetical protein FG09158.1 [Gibberella zeae PH-1], gi\|42555365\|gb\|E...	496.0	[0..2]	[475..35]
gi\|39943208, gi\|... - gi\|39943208\|ref\|XP_361141.1\| hypothetical protein MG03684.4 [Magnaporthe grisea 70-15], gb\|EAA52089....	493.0	[0..15]	[477..73]
gi\|85117746 - gi\|85117746\|ref\|XP_965317.1\| hypothetical protein NCU03217 [Neurospora crassa OR74A] gi\|28927124, gi\|... - gi\|32420419\|ref\|XP_330653.1\| hypothetical protein [Neurospora crassa], gi\|28927124\|gb\|EAA36081.1\| hy...	490.0	[0..36]	[474..79]
gi\|40744334, gi\|... - gi\|67524963\|ref\|XP_660543.1\| hypothetical protein AN2939.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	487.0	[0..12]	[484..53]
gi\|46100025, gi\|... - gi\|71020171\|ref\|XP_760316.1\| hypothetical protein UM04169.1 [Ustilago maydis 521], ref\|XP_401784.1\| ...	472.0	[0..3]	[483..63]
gi\|115384930, gi... - gi\|115384930\|ref\|XP_001209012.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	459.0	[0..7]	[484..49]
gi\|66852428, gi\|... - gi\|71000148\|ref\|XP_754791.1\| MRS7 family protein [Aspergillus fumigatus Af293], gi\|66852428\|gb\|EAL92... gi\|159127800 - gi\|159127800\|gb\|EDP52915.1\| MRS7 family protein [Aspergillus fumigatus A1163]	456.0	[0..35]	[483..135]
gi\|83766233 - gi\|83766233\|dbj\|BAE56376.1\| unnamed protein product [Aspergillus oryzae] gi\|169767814 - gi\|169767814\|ref\|XP_001818378.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220701651, gi... - gi\|238484725\|ref\|XP_002373601.1\| MRS7 family protein [Aspergillus flavus NRRL3357], gi\|220701651\|gb\|...	451.0	[0..32]	[473..76]
gi\|88186238, gi\|... - gi\|88186238\|gb\|EAQ93706.1\| hypothetical protein CHGG_01941 [Chaetomium globosum CBS 148.51], gi\|1161...	451.0	[0..36]	[476..74]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYPRTHIQF PSMLRNRLFK TPHQTGFQWR LGAPATGITI RNQPIRSYSG LRGNFLIDKR  60
   61 LSPVKFNKYS PSDIVFYNIG SSRLYSTETP T

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [92-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSKVKEAPKQ VAAEETKPTT VVKKPSIWQR VKGGVLHFWD GTKLLGVEIK ISSKLVYKMA  60
   61 VGYELTRRES RQLTRTLKDI GRLVPFSVFV VVPFAELLLP IAVKLFPNLL PSTFEDAKDK 120
  121 EAKKAQLRKT RNEVSNMLRS TLKSGKFTFS NETRESKEFR DFFQKVRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [260-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGQSPSREEL IEVCKYFKDD ITLDNLSRAQ LVAMCRYMNL NAFGTDPLLR YNIRHRMRQI  60
   61 RRDDRAIYIE GINSLSIPEL FNACNSRGIR TQGLSPAKLK EELSVWLDMR IKHGIPSVIL 120
  121 MLSNAFSYGY NEGTY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [395-485]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSRWDALQDT LASIPDELYH ETVVDMPTKQ VSNKERLEIL REQEELIEEE AEHVAEHPDL  60
   61 AKKQTEENKA TSKPAVSAKS PESNIPKNER K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits