YRC Public Data Repository - Protein Structure Prediction

Protein:	YDW1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDW1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46137721, gi\|... - gi\|46137721\|ref\|XP_390552.1\| hypothetical protein FG10376.1 [Gibberella zeae PH-1], gi\|42546435\|gb\|E...	443.0	[0..55]	[441..1]
gi\|38566805, gi\|... - gi\|38566805\|emb\|CAE76113.1\| conserved hypothetical protein [Neurospora crassa], gi\|32412584\|ref\|XP_3... gi\|85099608 - gi\|85099608\|ref\|XP_960816.1\| hypothetical protein NCU01279 [Neurospora crassa OR74A]	433.0	[0..64]	[441..9]
gi\|238485075, gi... - gi\|238485075\|ref\|XP_002373776.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169768124 - gi\|169768124\|ref\|XP_001818533.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83766388 - gi\|83766388\|dbj\|BAE56531.1\| unnamed protein product [Aspergillus oryzae]	425.0	[0..61]	[441..5]
gi\|114188951, gi... - gi\|115402057\|ref\|XP_001217105.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	421.0	[0..58]	[441..3]
gi\|119184844, gi... - gi\|90302067\|gb\|EAS31698.1\| hypothetical protein CIMG_07177 [Coccidioides immitis RS], gi\|119184844\|r...	408.0	[0..61]	[441..5]
gi\|159131020 - gi\|159131020\|gb\|EDP56133.1\| conserved hypothetical protein [Aspergillus fumigatus A1163] gi\|70994976, gi\|... - gi\|70994976\|ref\|XP_752264.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668498...	402.0	[0..61]	[441..5]
gi\|51012737 - gi\|51012737\|gb\|AAT92662.1\| YIL090W [Saccharomyces cerevisiae]	388.0	[0..60]	[422..12]
gi\|49087062, gi\|... - gi\|67521850\|ref\|XP_658986.1\| hypothetical protein AN1382.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	383.0	[0..61]	[441..5]
gi\|68488727, gi\|... - gi\|68488764\|ref\|XP_711771.1\| hypothetical protein CaO19.698 [Candida albicans SC5314], gi\|68488727\|r... orf19.8317, orf1... - orf19.698 CGDID:CAL0001174 Assembly 19, Contig19-10065 (22053, 20569) CDS, reverse complemented, tra...	382.0	[0..61]	[441..13]

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Predicted Domain #1

Region A:
Residues: [1-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQEIRSNNY DISVSTVEDT SFEAMDDSIL EIIDDEAPEI QGKPKANIST HFRNMLAMFG  60
   61 NFLSLGFFLV IIVLVGIAFE IGGRFCGLIL TLALEVYFFS TALLKLFGLR KIALTLHFFE 120
  121 PLLVFILLII ALNASPSIEQ NKYASFLASA WNTALLHFTP LFNLLEGMAS LLVVQALGHL 180
  181 SRWLVHNKSE NWMFFILLNA SSAISMSLYL LYRVSSFSIS NPNALMIGFS LATVIVISIY 240
  241 GVASGRANLS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [251-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EASLMFLYIA YTVYMVCTDF GNPNTSSLEK PKFDYLPPNI LQSVHYLIST ISATLPRTLY  60
   61 NIVLFMVAAA KTVAPSVFAT FAFRISVMYA VTRILPAIQN NIIFLEYSRT SKQGMWSILS 120
  121 PCILIAVYTN LLLQHLYPTP SFTSPVNQIL CSAEIWRWVS AILTLLLYAI ELAYSKESDT 180
  181 GQALASHFKL D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits