YRC Public Data Repository - Protein Structure Prediction

Protein:	RM28_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM28_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42548041, gi\|... - gi\|46116450\|ref\|XP_384243.1\| hypothetical protein FG04067.1 [Gibberella zeae PH-1], gi\|42548041\|gb\|E...	125.0	[0..6]	[110..20]
gi\|28923625, gi\|... - gi\|32418660\|ref\|XP_329808.1\| predicted protein [Neurospora crassa], gi\|28923625\|gb\|EAA32797.1\| predi... gi\|85105754 - gi\|85105754\|ref\|XP_962033.1\| hypothetical protein NCU08684 [Neurospora crassa OR74A]	123.0	[0..3]	[115..231]
gi\|67537568, gi\|... - gi\|67537568\|ref\|XP_662558.1\| hypothetical protein AN4954.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	122.0	[0..18]	[114..67]
gi\|70999738, gi\|... - gi\|70999738\|ref\|XP_754586.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668522...	120.0	[0..7]	[115..68]
gi\|238878727 - gi\|238878727\|gb\|EEQ42365.1\| 60S ribosomal protein L28, mitochondrial precursor [Candida albicans WO-... gi\|68488461, gi\|... - gi\|68488520\|ref\|XP_711885.1\| likely mitochondrial ribosomal protein MRPL28p [Candida albicans SC5314... orf19.8027, orf1... - orf19.397 CGDID:CAL0004959 Assembly 19, Contig19-10051 (25996, 25553) CDS, reverse complemented, tra...	120.0	[0..31]	[114..47]
gi\|83767608 - gi\|83767608\|dbj\|BAE57747.1\| unnamed protein product [Aspergillus oryzae] gi\|169770559 - gi\|169770559\|ref\|XP_001819749.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|238487020, gi... - gi\|238487020\|ref\|XP_002374748.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22...	119.0	[0..8]	[113..65]
gi\|44985056 - gi\|44985056\|gb\|AAS53834.1\| AFR463Cp [Ashbya gossypii ATCC 10895] gi\|45198981, gi\|... - gi\|45198981\|ref\|NP_986010.1\| AFR463Cp [Ashbya gossypii ATCC 10895], gi\|44985056\|gb\|AAS53834.1\| AFR46...	119.0	[0..31]	[114..49]
RM28_YEAST - 54S ribosomal protein L28, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|151942427 - gi\|151942427\|gb\|EDN60783.1\| YmL28 [Saccharomyces cerevisiae YJM789] MRPL28 - Mitochondrial ribosomal protein of the large subunit gi\|190404614 - gi\|190404614\|gb\|EDV07881.1\| 60S ribosomal protein L28, mitochondrial precursor [Saccharomyces cerevi...	118.0	[0..7]	[114..27]
gi\|119187077, gi... - gi\|90302931\|gb\|EAS32562.1\| hypothetical protein CIMG_03586 [Coccidioides immitis RS], gi\|119187077\|r...	118.0	[0..10]	[115..60]
gi\|50292137, gi\|... - gi\|50292137\|ref\|XP_448501.1\| unnamed protein product [Candida glabrata], gi\|49527813\|emb\|CAG61462.1\|... gi\|49527813 - gi\|49527813\|emb\|CAG61462.1\| unnamed protein product [Candida glabrata]	116.0	[0..6]	[114..27]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKASKGKHQ SGPSNHSESI DLVRKALYGN KKVRSLKMNP DMWEKHEVIN RAWRIHEYRQ  60
   61 EKQRENLLKN QFSAMKIACE ELKHTSETLY KAAMSDSINR RFPVETRTPT DTPPRLSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits