YRC Public Data Repository - Protein Structure Prediction

Protein:	NNRE_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NNRE_SCHPO.

Description	E-value	Query Range	Subject Range
NNRE_NEUCR - NAD(P)H-hydrate epimerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 12... gi\|32416596, gi\|... - gi\|32416596\|ref\|XP_328776.1\| hypothetical protein [Neurospora crassa], gi\|28927006\|gb\|EAA35965.1\| pr...	254.0	[0..1]	[241..1]
gi\|22022585, gi\|... - gi\|23308409\|gb\|AAN18174.1\| At5g49970/K9P8_11 [Arabidopsis thaliana], gi\|22022585\|gb\|AAM83249.1\| AT5g...	246.0	[0..2]	[238..8]
gi\|125531706 - gi\|125531706\|gb\|EAY78271.1\| hypothetical protein OsI_33318 [Oryza sativa Indica Group] gi\|31431696, gi\|... - gi\|37533692\|ref\|NP_921148.1\| putative pyridoxamine 5-phosphate oxidase [Oryza sativa (japonica culti...	245.0	[0..10]	[238..24]
gi\|42554588, gi\|... - gi\|46135847\|ref\|XP_389615.1\| hypothetical protein FG09439.1 [Gibberella zeae PH-1], gi\|42554588\|gb\|E...	242.0	[0..19]	[241..1]
gi\|24640953, gi\|... - gi\|74872437\|sp\|Q9W2Y3.1\|CG974_DROME RecName: Full=YjeF N-terminal domain-containing protein CG2974; ...	242.0	[0..1]	[234..46]
APOA1BP - apolipoprotein A-I binding protein	242.0	[0..4]	[234..58]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSISCLSASA AKALDAELMS AGAFSIDQLM ELAGLSVSQA VYREYPPSQY SQVLICCGPG  60
   61 NNGGDGLVAA RHLWQYGYKP TVYYPKPSSP ELYKRLCKQL DDLDIPVVKS HDSNHFSQLL 120
  121 RDSKLVVDSI FGFSFKGPVR DPFGSILAAI VESKIKVLSV DAPSSWEIDE GPQKEGPLKD 180
  181 FDPDTLISLT APKPCSKFYK GKHYLGGRFV SKVITKKFNL SLPPYPGIDQ VVDITNKPLS 240
  241 MV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.0
Match:	2dg2A
Description:	No description for 2dg2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits