| Protein: | YDM6_SCHPO |
| Organism: | Schizosaccharomyces pombe 972h- |
| Length: | 929 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDM6_SCHPO.
| Description | E-value | Query Range |
Subject Range |
|
|
403.0 | [0..4] | [813..1857] |
|
|
335.0 | [0..4] | [813..854] |
|
|
334.0 | [0..4] | [813..857] |
|
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334.0 | [0..4] | [813..857] |
|
|
334.0 | [0..4] | [813..855] |
|
Region A: Residues: [1-325] |
1 11 21 31 41 51
| | | | | |
1 MARKGKVNTL PQPQGKHQRK GKKQLENKIL HSYEEESAGF DSEELEDNDE QGYSFGVNSE 60
61 DDEEIDSDEA FDEEDEKRFA DWSFNASKSG KSNKDHKNLN NTKEISLNEE DDSDDSVNSD 120
121 KLENEGSVGS SIDENELVDL DTLLDNDQPE KNESNTASTI RPPWIGNNDH ATDKENLLES 180
181 DASSSNDSES ELTDSADNMN ESDSESEIES SDSDHDDGEN SDSKLDNLRN YIVSLNQKRK 240
241 KDEADAESVL SSDDNDSIEE ISIKKVKYDP HETNKESEYN LIGSSEKTID ITDLLDSIPM 300
301 NEQLKVSLKP LVSESSSISS KKLDA
|
| Detection Method: |  |
| Confidence: | 15.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [326-497] |
1 11 21 31 41 51
| | | | | |
1 PLAKSIQDRL ERQAAYEQTK NDLEKWKPIV ADNRKSDQLI FPMNETARPV PSNNGLASSF 60
61 EPRTESERKM HQALLDAGLE NESALKKQEE LALNKLSVEE VAERTRQLRF MRELMFREER 120
121 KAKRVAKIKS KTYRKIRKNR KEKEMALIPK SEEDLENERI KSEEARALER MT
|
| Detection Method: | |
| Confidence: | 1.17 |
| Match: | 1rh1A |
| Description: | crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [498-821] |
1 11 21 31 41 51
| | | | | |
1 QRHKNTSSWT RKMLERASHG EGTREAVNEQ IRKGDELMQR IHGKEISEMD GEDVSEFSDS 60
61 DYDTNEQVST AFEKIRNEEE PKLKGVLGMK FMRDASNRQK ALVQDEMQAF EDELAGVPNE 120
121 DDTSQKGEDG VPGVLIGNNT GRRSFKPSEE AAKLSLPSRK NPFVSDSAVL KVNKPEMKEG 180
181 QKKAEARKKK ESPLEATEET NPWLQVPDQR TSSAKKLDKN SSKADKKNHK LKMDKVASLQ 240
241 ELVEEPKVQP DLIFEEKAFE SASEAESDVD VSVPMLKPTK GRLSIKQREL VAKAFAGDDV 300
301 VAEFEKDKED WVQEDAPKEE DHSL
|
| Detection Method: | |
| Confidence: | 7.522879 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [822-929] |
1 11 21 31 41 51
| | | | | |
1 PGWGSWGGVG VKQRKTKPKV KKIAGLDPSK RKDSKLKHVI INEKRNKKAA KLTADSVPFP 60
61 FESREQYERS LNLPMGPEWT TRASHHKAVA PRVVTKRGKV INPIKAPN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
