YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS53_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	756 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS53_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|42547620, gi\|... - gi\|46107976\|ref\|XP_381046.1\| hypothetical protein FG00870.1 [Gibberella zeae PH-1], gi\|42547620\|gb\|E...	628.0	[0..5]	[756..2]
gi\|85118218 - gi\|85118218\|ref\|XP_965410.1\| hypothetical protein NCU03024 [Neurospora crassa OR74A] gi\|38566968, gi\|... - gi\|38566968\|emb\|CAE76269.1\| related to subunit of VP52-54 complex [Neurospora crassa], gi\|32419535\|r...	625.0	[0..11]	[756..8]
gi\|157786652, gi... - gi\|157786652\|ref\|NP_001099283.1\| vacuolar protein sorting 53 homolog [Rattus norvegicus], gi\|1490534...	619.0	[0..14]	[729..37]
gi\|74211752, gi\|... - gi\|74211752\|dbj\|BAE29229.1\| unnamed protein product [Mus musculus], gi\|74211688\|dbj\|BAE29200.1\| unna...	618.0	[0..14]	[729..37]
gi\|76643571 - gi\|76643571\|ref\|XP_888185.1\| PREDICTED: similar to CG3338-PA isoform 7 [Bos taurus]	618.0	[0..14]	[729..37]

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Predicted Domain #1

Region A:
Residues: [1-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNGNDNSLI IKNIGNNEFK FVETLHELLP EDITYDDLGS LRLSLSERLQ ESVKKLDANK  60
   61 KTYEDAKLSM GEKMDDLNSS IVSLLQELST LQSVAENTQS SIVQMTSEIK NLDFAKQNLA 120
  121 TSMTMLKRLQ MLVTAYEKLR TLRQNQKFGE AISLMQATLQ LLNFFKKYRS VERIASLSRS 180
  181 ISEFQKSFYE QVFDTFQSQF KKESGMRGGF SPSSVQYLNE LCRFIDIFAG DPPESVIRWY 240
  241 CRHQLEDFMK VFRENEEAGS LENLPRRYTW FKKLLQTYDQ LHKP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [285-397]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IFPPHWKVDF RLYEVFCEET KNDLSKLLKD DRLSLQVFVA SLEQTLEFES FIDHRFYNTK  60
   61 SRFNSNFEPK ERQAYNALSS VFEPHYTLYF NQQSQEFSIL FENFALEKQT STD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	2dfsA
Description:	No description for 2dfsA was found.

Predicted Domain #3

Region A:
Residues: [398-756]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESSQVLSSSI KLFQAYRKTL TQFVRLTRSS PLVGLKNLFI KWLRRYTQVE LLDYQESSTF  60
   61 KDIAIRLNTA EYIYRTTIEL EKRFQEISNK EFKDKMSFSE VLEVISSSRG TLLKFATGKF 120
  121 ENVLNSDLEP LSKMDLKNIE TVGDQSSYVG GAVQNMTAKA SEFLSVVDLN MFARNFCDRS 180
  181 CESFTRQFLN AIYLAKPISE VGAEQLLLDL YSFKNALLKL PDLKQDYSIT DSYINHLTIF 240
  241 MGYIETVLKT LLTPASPKAG FIQSYIFLVK DRSVTNFTVL LELKGVGKSD ISSFLQQFSD 300
  301 FVKKTPQLEE SSPIFKYLTI NTAVEQAATR SRLSLDLAPE SSRTLQNLGR LFTSKKKHV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	4.0
Match:	2fji1
Description:	No description for 2fji1 was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits