YRC Public Data Repository - Protein Structure Prediction

Protein:	YDJ7_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	311 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDJ7_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|113564435, gi... - gi\|50924474\|ref\|XP_472597.1\| OSJNBa0006B20.20 [Oryza sativa (japonica cultivar-group)], gi\|38344076\|...	442.0	[0..2]	[311..33]
gi\|116310791, gi... - gi\|218194897\|gb\|EEC77324.1\| hypothetical protein OsI_15996 [Oryza sativa Indica Group], gi\|116310791...	442.0	[0..2]	[311..33]
gi\|15218978, gi\|... - gi\|42571573\|ref\|NP_973877.1\| unknown protein [Arabidopsis thaliana], gi\|15218978\|ref\|NP_173559.1\| un...	351.0	[0..3]	[311..33]
gi\|68490903, gi\|... - gi\|68490924\|ref\|XP_710730.1\| hypothetical protein CaO19.4061 [Candida albicans SC5314], gi\|68490903\|... orf19.4061, orf1... - orf19.4061 CGDID:CAL0004870 Assembly 19, Contig19-10195 (19483, 18680) CDS, reverse complemented, tr...	318.0	[0..77]	[300..5]
gi\|46096737, gi\|... - gi\|71005334\|ref\|XP_757333.1\| hypothetical protein UM01186.1 [Ustilago maydis 521], ref\|XP_398801.1\| ...	315.0	[0..75]	[311..104]
gi\|62175655, gi\|... - gi\|70802625\|gb\|AAZ12530.1\| hypothetical protein, conserved [Trypanosoma brucei], gi\|62175655\|gb\|AAX6... gi\|71750203, gi\|... - gi\|72391590\|ref\|XP_846089.1\| hypothetical protein [Trypanosoma brucei TREU927], gi\|71750203\|ref\|XP_8...	313.0	[0..79]	[311..56]
gi\|14250902 - gi\|14250902\|emb\|CAC39256.1\| hypothetical protein [Trypanosoma brucei]	312.0	[0..79]	[311..56]
YOR238W - Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	302.0	[0..71]	[311..2]

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Predicted Domain #1

Region A:
Residues: [1-311]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNKRLTIQL PFYATQTASS SRFWRVLSPK SRTGIALYAS LILLCIFFTI FSTMSHPSLQ  60
   61 CFSPTSLVGA QPLKNLTHLI IVAGHAVWLG GSTNGEDDSE WILEPYQKGE GKVFAQHVRS 120
  121 GLDLLSQDDS SLLVFSGGQT RNGAGPSSEA QSYYSLSMQI NSDEGLAARR TTEEFARDSL 180
  181 ENVLFSVARF YEVTSRYPQK ITVVSFDFKR DRFLNLHRKA IKFPEHKFHF VGIDPEGGVS 240
  241 DATREAERKN AIIPFTEDPY ACSNPLLVKK RMERNPFRRQ HSYLITCPEL IPLLQYCPSD 300
  301 PSKFFNGKLP W

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits