YRC Public Data Repository - Protein Structure Prediction

Protein:	TSSK6_MOUSE
Organism:	Mus musculus
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TSSK6_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|60360264 - gi\|60360264\|dbj\|BAD90376.1\| mKIAA4207 protein [Mus musculus]	288.0	[0..2]	[268..47]
gi\|9845487, gi\|1... - ref\|NP_059672.1\| MAP/microtubule affinity-regulating kinase 2 isoform a [Homo sapiens], gi\|1749794\|...	288.0	[0..2]	[268..10]
gi\|109105629 - gi\|109105629\|ref\|XP_001115598.1\| PREDICTED: MAP/microtubule affinity-regulating kinase 2 isoform 8 [...	288.0	[0..2]	[268..43]
gi\|30584009, gi\|... - gi\|60652939\|gb\|AAX29164.1\| MAP/microtubule affinity-regulating kinase 2 [synthetic construct], gi\|60...	288.0	[0..2]	[268..10]
gi\|151556807, gi... - gi\|76657513\|ref\|XP_878977.1\| PREDICTED: similar to MAP/microtubule affinity-regulating kinase 2 isof...	288.0	[0..2]	[268..10]

Back

Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDKLLSEL GYKLGRTIGE GSYSKVKVAT SKKYKGTVAI KVVDRRRAPP DFVNKFLPRE  60
   61 LSILRGVRHP HIVHVFEFIE VCNGKLYIVM EAAATDLLQA VQRNGRIPGS QARELFSQIA 120
  121 GAVRYLHDHH LVHRDLKCEN VLLSPDERRV KITDFGFGRQ AHGYPDLSTT YCGSAAYASP 180
  181 EVLLGIPYDP KKYDVWSLGV VLYVMVTGCM PFDDSDIAGL PRRQKRGVLY PDGLELSERC 240
  241 KSLIAELLQF SPSARPSAGQ VARNGWLRAG DSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.69897
Match:	1zmuA
Description:	Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits