YRC Public Data Repository - Protein Structure Prediction

Protein:	YD03_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YD03_SCHPO.

Description	E-value	Query Range	Subject Range
ctns-1 - status:Confirmed UniProt:Q09500 protein_id:CAA88102.2	200.0	[0..7]	[252..117]
gi\|157749695 - gi\|157749695\|ref\|XP_001678561.1\| Hypothetical protein CBG00747 [Caenorhabditis briggsae AF16] CTNS_CAEBR - Cystinosin homolog OS=Caenorhabditis briggsae GN=ctns-1 PE=3 SV=1	184.0	[0..1]	[252..110]
gi\|149053064, gi... - gi\|27673096\|ref\|XP_220606.1\| PREDICTED: similar to mannose-P-dolichol utilization defect 1 [Rattus n...	179.0	[0..13]	[234..37]
MPU1_MOUSE - Mannose-P-dolichol utilization defect 1 protein OS=Mus musculus GN=Mpdu1 PE=1 SV=1	178.0	[0..13]	[234..37]
gi\|125773671, gi... - gi\|54637829\|gb\|EAL27231.1\| GA17357-PA [Drosophila pseudoobscura], gi\|125773671\|ref\|XP_001358094.1\| G...	177.0	[0..19]	[235..761]
CG17119-PA, FBpp... - This gene is referred to in FlyBase by the symbol Dmel\CG17119 (CG17119, FBgn0039045). It is a prote... gi\|220950256, gi... - gi\|220959222\|gb\|ACL92154.1\| CG17119-PA [synthetic construct], gi\|220950256\|gb\|ACL87671.1\| CG17119-PA...	176.0	[0..19]	[246..132]
gi\|67971144 - gi\|67971144\|dbj\|BAE01914.1\| unnamed protein product [Macaca fascicularis]	174.0	[0..13]	[234..37]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSTTTAPP GTHPNATAST VFAILGTVCW CVQLIPQIIK NYRAKSTEGL DTLFILSWVV  60
   61 ASIPLSVYNQ VQELNIALKV QPELFQALAF TTFFQCLYYG SKWPL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	24.136677
Match:	PF04193.5
Description:	No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [106-222]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKALFVVISF MLFSGGLQAM LILTIKLGIR RHVEWPVVFM GVLATVLVNI GFLPQYISIF  60
   61 RARAVTGISY LFLAIDSSGS LFSFLSLPFD RWDVLAAVDY GLLFIIEMGV FVLAFIF

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.886057
Match:	PF04193.5
Description:	No description for PF04193.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [223-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NVLLKNKSTP TDEDVTFTEE DGDEKDEEYS DIFSIKGKFN TRPNAWQNAY DSDTKSAIQI  60
   61 P

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.15
Match:	1qd7B
Description:	30S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits