YRC Public Data Repository - Protein Structure Prediction

Protein:	YBY5_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	284 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBY5_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|44983415 - gi\|44983415\|gb\|AAS52551.1\| AEL134Wp [Ashbya gossypii ATCC 10895] gi\|45190473, gi\|... - gi\|45190473\|ref\|NP_984727.1\| AEL134Wp [Ashbya gossypii ATCC 10895], gi\|44983415\|gb\|AAS52551.1\| AEL13...	301.0	[0..7]	[248..9]
KNH1 - Protein with similarity to Kre9p, which is involved in cell wall beta 1,6-glucan synthesis; overprod... gi\|190405060 - gi\|190405060\|gb\|EDV08327.1\| cell wall synthesis protein KNH1 precursor [Saccharomyces cerevisiae RM1... KNH1_YEAST - Cell wall synthesis protein KNH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KNH1 PE... gi\|207346937 - gi\|207346937\|gb\|EDZ73277.1\| YDL049Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|151941949 - gi\|151941949\|gb\|EDN60305.1\| conserved protein [Saccharomyces cerevisiae YJM789]	292.0	[0..6]	[248..4]
KNH1_CANGA - Cell wall synthesis protein KNH1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0... KNH1_CANGA - Cell wall synthesis protein KNH1 OS=Candida glabrata GN=KNH1 PE=3 SV=1	284.0	[0..8]	[248..1]
gi\|46444939, gi\|... - gi\|68465726\|ref\|XP_722931.1\| cell wall synthesis protein [Candida albicans SC5314], gi\|68465431\|ref\|... orf19.13283, orf... - KRE9 CGDID:CAL0002403 Assembly 19, Contig19-10236 (15003, 15818) CDS, translated using codon table 1...	275.0	[0..1]	[248..1]
gi\|238880825 - gi\|238880825\|gb\|EEQ44463.1\| hypothetical protein CAWG_02732 [Candida albicans WO-1] KRE9_CANAX - Cell wall synthesis protein KRE9 OS=Candida albicans GN=KRE9 PE=3 SV=1	273.0	[0..1]	[248..1]
gi\|50414382, gi\|... - gi\|50414382\|ref\|XP_457402.1\| hypothetical protein DEHA0B10549g [Debaryomyces hansenii CBS767], gi\|49...	193.0	[0..1]	[270..1]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTTMLMLVL LVCSYIHYVC AQIRFVTPAT TDSMDFTAIS FSWEESNTGI PLEDITNTVF  60
   61 YICSGSMDAP QPCAVLYTSP SPSSISQAGP FAISQVFGPA GRLYFLWAQS TYAGGIVNDY 120
  121 TDFFTVNGLT GTFDNYEIYA SLMALGVYPY VPTLTGFSTF LG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [163-284]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VWPTGTMRDW YLSQTTGVLR TGPIQNRPDS TFTAATTDIQ PLWETSSYSV FTTFAGPPIA  60
   61 TSTVFASPTY MYTLYANYAS TASKPTIIAT PTAGLRRRDS WAQAAPKRGM RLGEHKRGLL 120
  121 YS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits