YRC Public Data Repository - Protein Structure Prediction

Protein:	YBA9_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	186 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBA9_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|115389764, gi... - gi\|115389764\|ref\|XP_001212387.1\| protein ORM1 [Aspergillus terreus NIH2624], gi\|114194783\|gb\|EAU3648...	269.0	[0..5]	[168..7]
gi\|39958445, gi\|... - gi\|39958445\|ref\|XP_364412.1\| hypothetical protein MGG_09257 [Magnaporthe grisea 70-15], gb\|EAA55450....	268.0	[0..5]	[168..8]
gi\|90298266, gi\|... - gi\|90298266\|gb\|EAS27897.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119174238\|re... gi\|240106742 - gi\|240106742\|gb\|EER24929.1\| ORM1 protein, putative [Coccidioides posadasii C735 delta SOWgp]	268.0	[0..5]	[168..7]
gi\|70993314, gi\|... - gi\|70993314\|ref\|XP_751504.1\| unfolded protein response protein Orm1 [Aspergillus fumigatus Af293], g... gi\|159125562 - gi\|159125562\|gb\|EDP50679.1\| unfolded protein response Orm1, putative [Aspergillus fumigatus A1163]	265.0	[0..4]	[168..6]
gi\|40745942, gi\|... - gi\|67522953\|ref\|XP_659537.1\| hypothetical protein AN1933.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	258.0	[0..4]	[164..6]
gi\|42545146, gi\|... - gi\|46137273\|ref\|XP_390328.1\| hypothetical protein FG10152.1 [Gibberella zeae PH-1], gi\|42545146\|gb\|E...	258.0	[0..2]	[171..10]
gi\|109114982 - gi\|109114982\|ref\|XP_001087628.1\| PREDICTED: similar to ORM1-like 3 [Macaca mulatta]	256.0	[0..16]	[173..176]
gi\|111065327, gi... - gi\|169607124\|ref\|XP_001796982.1\| hypothetical protein SNOG_06616 [Phaeosphaeria nodorum SN15], gi\|11...	255.0	[0..6]	[167..9]
gi\|49527717 - gi\|49527717\|emb\|CAG61366.1\| unnamed protein product [Candida glabrata] gi\|49527717, gi\|... - gi\|50291945\|ref\|XP_448405.1\| unnamed protein product [Candida glabrata], gi\|49527717\|emb\|CAG61366.1\|...	251.0	[0..4]	[168..39]
gi\|116179764, gi... - gi\|88184807\|gb\|EAQ92275.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11617...	250.0	[0..14]	[168..17]

Back

Predicted Domain #1

Region A:
Residues: [1-186]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSSSRRRS SSLVTKVPKP TIDDRLDQGS ATNYNSNWVN YKGAWVIHIV LIAALRLIFH  60
   61 AIPSVSRELA WTLTNLTYMA GSFIMFHWVT GTPFEFNGGA YDRLTMWEQL DEGNQYTPAR 120
  121 KYLLVLPIIL FLMSTHYTHY NGWMFLVNIW ALFMVLIPKL PAVHRKRIFG IQKLSLRDDD 180
  181 NDSIPR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.275724
Match:	PF04061.5
Description:	No description for PF04061.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.718	0.186	membrane	a.24.3	Cytochromes
View	Download	0.463	0.086	membrane	a.118.9	ENTH/VHS domain
View	Download	0.594	0.000	integral to membrane	a.74.1	Cyclin-like
View	Download	0.494	0.000	integral to membrane	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.508	N/A	N/A	d.56.1	GroEL-intermediate domain like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits