YRC Public Data Repository - Protein Structure Prediction

Protein:	VPS71_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VPS71_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|122891090, gi... - gi\|62899050\|ref\|NP_001017401.1\| zinc finger, HIT domain containing 1 [Danio rerio], gi\|62531213\|gb\|A...	163.0	[0..11]	[138..8]
gi\|109066184 - gi\|109066184\|ref\|XP_001107895.1\| PREDICTED: zinc finger, HIT type 1 isoform 1 [Macaca mulatta]	156.0	[0..11]	[138..22]
gi\|73957813 - gi\|73957813\|ref\|XP_536855.2\| PREDICTED: similar to Zinc finger HIT domain containing protein 1 (Cycl... ZNHI1_BOVIN - Zinc finger HIT domain-containing protein 1 OS=Bos taurus GN=ZNHIT1 PE=2 SV=1 ENSCJAT00000031181 - null ZNHIT1 - zinc finger, HIT type 1 CCDS5716.1_1 - null gi\|114615130 - gi\|114615130\|ref\|XP_527843.2\| PREDICTED: zinc finger, HIT domain containing 1 [Pan troglodytes] gi\|109066182 - gi\|109066182\|ref\|XP_001107951.1\| PREDICTED: zinc finger, HIT type 1 isoform 2 [Macaca mulatta] gi\|123982920, gi... - gi\|123997601\|gb\|ABM86402.1\| zinc finger, HIT type 1 [synthetic construct], gi\|123982920\|gb\|ABM83201.... gi\|149755986 - gi\|149755986\|ref\|XP_001504511.1\| PREDICTED: similar to Zinc finger HIT domain-containing protein 1 (...	153.0	[0..10]	[138..7]
gi\|12848798, gi\|... - gi\|58037197\|ref\|NP_081594.1\| zinc finger, HIT domain containing 1 [Mus musculus], gi\|26348771\|dbj\|BA... tr\|D3ZNG9\|D3ZNG9_RAT - Uncharacterized protein OS=Rattus norvegicus GN=Znhit1	151.0	[0..11]	[138..7]
gi\|111305747, gi... - gi\|118403566\|ref\|NP_001017056.2\| zinc finger, HIT type 1 [Xenopus (Silurana) tropicalis], gi\|1113057...	146.0	[0..11]	[138..8]
gi\|34871702, gi\|... - ref\|XP_341052.1\| similar to zinc finger, HIT domain containing 1; putative cyclin G1 interacting pro...	143.0	[0..11]	[133..42]
gi\|32415479, gi\|... - gi\|32415479\|ref\|XP_328219.1\| predicted protein [Neurospora crassa], gi\|28918290\|gb\|EAA27967.1\| predi... gi\|85083850 - gi\|85083850\|ref\|XP_957203.1\| hypothetical protein NCU01780 [Neurospora crassa OR74A]	142.0	[0..1]	[132..1]

Back

Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFVTPIEHAV QKRKKQKQRS VVDPVTRERQ LKRNLADLEK DNFSDIRFEI PKDLLQRRVL  60
   61 PISVRRILSS RKTFVNYLDE TPNSRYNTCV AKPSYKPPRK FCNVCGYWGK YACQNCGTSY 120
  121 CSKGCEVIHS ETRCMKVYA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits