YRC Public Data Repository - Protein Structure Prediction

Protein:	LTV1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	386 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LTV1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|38107018, gi\|... - gi\|39972445\|ref\|XP_367613.1\| hypothetical protein MGG_07524 [Magnaporthe grisea 70-15], gb\|EAA53247....	430.0	[0..1]	[386..1]
gi\|85099140 - gi\|85099140\|ref\|XP_960723.1\| hypothetical protein NCU04165 [Neurospora crassa OR74A] gi\|16944646, gi\|... - gi\|32405784\|ref\|XP_323505.1\| hypothetical protein ( (AL513445) related to low-temperature viability ...	421.0	[0..1]	[386..1]
gi\|67523613, gi\|... - gi\|67523613\|ref\|XP_659866.1\| hypothetical protein AN2262.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	382.0	[0..2]	[386..3]
gi\|46095638, gi\|... - gi\|71004340\|ref\|XP_756836.1\| hypothetical protein UM00689.1 [Ustilago maydis 521], ref\|XP_398304.1\| ...	359.0	[0..4]	[386..10]
gi\|42554950, gi\|... - gi\|46125635\|ref\|XP_387371.1\| hypothetical protein FG07195.1 [Gibberella zeae PH-1], gi\|42554950\|gb\|E...	358.0	[0..1]	[386..1]
gi\|238503596, gi... - gi\|238503596\|ref\|XP_002383031.1\| low-temperature viability protein ltv1 [Aspergillus flavus NRRL3357... gi\|169765111 - gi\|169765111\|ref\|XP_001817027.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764881 - gi\|83764881\|dbj\|BAE55025.1\| unnamed protein product [Aspergillus oryzae]	338.0	[0..2]	[386..3]
gi\|70998518, gi\|... - gi\|70998518\|ref\|XP_753981.1\| low-temperature viability protein ltv1 [Aspergillus fumigatus Af293], g... gi\|159126285 - gi\|159126285\|gb\|EDP51401.1\| low-temperature viability protein ltv1 [Aspergillus fumigatus A1163]	337.0	[0..2]	[386..3]
gi\|396436 - gi\|396436\|emb\|CAA80955.1\| essential for low-temperature viability [Saccharomyces cerevisiae]	330.0	[0..1]	[364..1]
gi\|44981490 - gi\|44981490\|gb\|AAS51275.1\| ACR048Cp [Ashbya gossypii ATCC 10895] gi\|44981490, gi\|... - gi\|45185735\|ref\|NP_983451.1\| ACR048Cp [Ashbya gossypii ATCC 10895], gi\|44981490\|gb\|AAS51275.1\| ACR04...	329.0	[0..4]	[364..3]

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Predicted Domain #1

Region A:
Residues: [1-49]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKKFVNKN KAQTFHLVHR SQRDPQYHDE NATERVLVSA ETLNKTARR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [50-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LNRQTLDEEY GSTIRPNEGE AANYGIYFDD TEYDYMQHLR NIGNEDATWV EAPATRKTQD  60
   61 KQKKQQIQLR DQPSILPQEV LPSEVELERT YQDQQSVPDA ISGFQPDMDP RLREVLEQLE 120
  121 HSDINDEETS DFDEEFEKLV ASGKADESEF YAQPFVEEGE KD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [212-386]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YDEAAAAKAG KSEWEIEFEK FKLEQKKQPD VASSDGDFSD EPESEERDEV PELVSSSKSK  60
   61 SKTKRKARTA LSSVSMSSSA LFRNEGLTLL DDRFDKVEEE YTPIKDEREL IDPDQKDVFD 120
  121 LVNDNQFNDI MDEFLVSYGP TLGRKKAPSR MSNSKKKSSL EELDNVRKML GRARI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits