YRC Public Data Repository - Protein Structure Prediction

Protein:	PRP3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	542 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PRP3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|73981311 - gi\|73981311\|ref\|XP_860581.1\| PREDICTED: similar to U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-m...	556.0	[0..12]	[539..127]
gi\|109016056 - gi\|109016056\|ref\|XP_001101105.1\| PREDICTED: PRP3 pre-mRNA processing factor 3 homolog isoform 3 [Mac...	547.0	[0..12]	[539..127]
PRPF3_BOVIN - U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=2 SV=1	547.0	[0..12]	[539..127]
PRPF3_PONAB - U4/U6 small nuclear ribonucleoprotein Prp3 OS=Pongo abelii GN=PRPF3 PE=2 SV=1 gi\|55732632 - gi\|55732632\|emb\|CAH93015.1\| hypothetical protein [Pongo abelii]	547.0	[0..12]	[539..127]
tr\|G1T1X4\|G1T1X4... - pep:novel chromosome:oryCun2:13:41703230:41729123:-1 gene:ENSOCUG00000011760 transcript:ENSOCUT00000... gi\|149751209 - gi\|149751209\|ref\|XP_001489457.1\| PREDICTED: similar to U4/U6 small nuclear ribonucleoprotein Prp3 (P... tr\|F2Z4C4\|F2Z4C4... - Isoform of Q2KIA6, U4/U6 small nuclear ribonucleoprotein Prp3 OS=Bos taurus GN=PRPF3 PE=4 SV=1 tr\|G3H2W0\|G3H2W0... - U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cricetulus griseus GN=I79_004563 PE=4 SV=1 CCDS951.1_1 - null tr\|M3WJS5\|M3WJS5... - Pre-mRNA processing factor 3 OS=Felis catus GN=PRPF3 PE=4 SV=1 PRPF3 - PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) gi\|73981301 - gi\|73981301\|ref\|XP_533045.2\| PREDICTED: similar to U4/U6 small nuclear ribonucleoprotein Prp3 (Pre-m... gi\|123986789, gi... - gi\|123999026\|gb\|ABM87099.1\| PRP3 pre-mRNA processing factor 3 homolog (S. cerevisiae) [synthetic con... gi\|114559255 - gi\|114559255\|ref\|XP_001168487.1\| PREDICTED: PRP3 pre-mRNA processing factor 3 homolog isoform 2 [Pan...	546.0	[0..12]	[539..127]
gi\|74143287 - gi\|74143287\|dbj\|BAE24161.1\| unnamed protein product [Mus musculus]	545.0	[0..12]	[539..127]
gi\|109467179, gi... - gi\|62643902\|ref\|XP_342296.2\| PREDICTED: similar to PRP3 pre-mRNA processing factor 3 homolog [Rattus...	544.0	[0..12]	[539..127]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRNKRRLES SQLRESSSPN SQNKPNAMEE IKRRRLQLEQ RLAQQAQVPW EKRSENGNNA  60
   61 GMETIQNRIS ELKEKTAKRF NANIPKSEGL FRDDSNGAKG GLKVGIHPVL LDGNIQNTIL 120
  121 TPENRKRTAS FSTKGVSLSQ HQLLKPPAIT EQNPFLDTAP TPRLEDSPFY DPRTKESRKT 180
  181 RGSRNLHLNE SGKFIEEANQ ARRQARLEDL KKRIALHSHK AGIEDELDIT SKSIGR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [237-392]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DTIPNIEWWD LPFIKDYNDY GDENNWLIDG PQSIINSAIQ HPIPVLPPYA KNQPSSHSVF  60
   61 LTKKEQKKIR RQTRAEARKE KQDRQLLGIE PPEPPKVKLS NLMHVLGDDA IKDPTKIEAE 120
  121 VRKQVEERRL RHERENEERK LTPEERKEKA FRKKDE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [393-542]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSAAGLRCLV FRIKYLAHRP HRLKIDLNAK QWGATGVCIL NANFNLVIFE AGQKAIKKLK  60
   61 RLMLERIDWT DTSRNSIIAQ GNKLVDTEGR ELNYTENTCN LVWEGEIGRR AFRYWSFRSC 120
  121 PSENDAKSYL EEQGGAEHFW MLAKSWSENV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2iygA
Description:	No description for 2iygA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits